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(-) Description

Title :  THE STRUCTURE OF L-PGS FROM BACILLUS LICHENIFORMIS
 
Authors :  J. Krausze, S. Hebecker, D. W. Heinz, J. Moser
Date :  16 Oct 14  (Deposition) - 19 Aug 15  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase, T-Rna Dependent Aminoacylation, Bacterial Resistance Proteins, L-Pgs, Lipid Homeostasis, Yfix, Phenix. Mr_rosetta, Lysine Amide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Hebecker, J. Krausze, T. Hasenkampf, J. Schneider, M. Groenewold, J. Reichelt, D. Jahn, D. W. Heinz, J. Moser
Structures Of Two Bacterial Resistance Factors Mediating Trna-Dependent Aminoacylation Of Phosphatidylglycerol With Lysine Or Alanine.
Proc. Natl. Acad. Sci. Usa V. 112 10691 2015
PubMed-ID: 26261323  |  Reference-DOI: 10.1073/PNAS.1511167112

(-) Compounds

Molecule 1 - LYSYL-TRNA-DEPENDENT L-YSYL-PHOSPHATIDYLGYCEROL SYNTHASE
    Atcc: 14580
    Chains: A, B
    EC Number: 2.3.2.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET52B
    Expression System Vector Type: PLASMID
    Fragment: SOLUBLE DOMAIN, UNP RESIDUES 519-850
    Organism Scientific: BACILLUS LICHENIFORMIS
    Organism Taxid: 1402
    Strain: DSM13

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1LYN1Ligand/Ion2,6-DIAMINO-HEXANOIC ACID AMIDE
2TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1LYN1Ligand/Ion2,6-DIAMINO-HEXANOIC ACID AMIDE
2TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1LYN-1Ligand/Ion2,6-DIAMINO-HEXANOIC ACID AMIDE
2TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:687 , LYS A:694 , GLY A:699 , ASP A:739 , LEU A:740 , MET A:741 , ARG A:742BINDING SITE FOR RESIDUE LYN A1851
2AC2SOFTWAREARG A:614 , LYS A:629 , GLU A:632 , TRP A:821 , ARG A:822 , GLY A:823 , TYR A:825 , HOH A:2018BINDING SITE FOR RESIDUE TRS A1852
3AC3SOFTWAREARG B:614 , LYS B:629 , GLU B:632 , TRP B:821 , ARG B:822 , GLY B:823 , TYR B:825BINDING SITE FOR RESIDUE TRS B1849

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4V36)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Pro A:670 -Pro A:671
2Pro B:670 -Pro B:671

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4V36)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4V36)

(-) Exons   (0, 0)

(no "Exon" information available for 4V36)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:325
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh....hhhhhhhh..eeee.....eeeeeeee..eeeee...ee...hhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhh...eeeeeeeeeeee..........hhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh............hhhhhh...eeeee.....eeeeeeee......eeeeeeeee......hhhhhhhhhhhhhhhhhh..eeeeeee..........hhhhhhhhhhhh........hhhhhhh...eeeeeeeee.hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4v36 A 523 KEIGEEPDPEKLEAFLEEKGGNALSHLGFLGDKRFFYSSDGNALIQFAKVGQRLVVLGDPSGREDSFPLVIKEFLHAADQKGYLVIFYQIEREDMALYHDFGYRFFKLGEEAIVDLDTFTISGKKRAGLRAIYNRFEREGYTFHVEQPPFSREFLNELRQVSDEWLGRKKEKGFSLGFFQEDYLQKAPIAVLKSEEGEIVAFMNIMPMYREGEISIDLMRYSKKAPKGIMDALFIYLFQWGKEQGYTAFNMGMAPLSNVGTSFWTERLAAVIFNNVSYMYSFSGLRSFKEKYKPVWRGKYLAYRKNRSLPVTMILVTRLIGRRTK 850
                                   532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782||     795       805       815       825       835       845     
                                                                                                                                                                                                                                                                                              783|                                                               
                                                                                                                                                                                                                                                                                               787                                                               


Chain B from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh....hhhhhhhh..eeee.....eeeeeeee..eeeee...ee...hhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhh.eeeeeeeeeeeee.......hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh............hhhhhh...eeeee.....eeeeeeeeeee...eeeeeeeee......hhhhhhhhhhhhhhhhh...eeeeeee........hhhhhhhhhh..hhhhhhhh...eeeeeeeeee...hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4v36 B 523 KEIGEEPDPEKLEAFLEEKGGNALSHLGFLGDKRFFYSSDGNALIQFAKVGQRLVVLGDPSGREDSFPLVIKEFLHAADQKGYLVIFYQIEREDMALYHDFGYRFFKLGEEAIVDLDTFTISGKKRAGLRAIYNRFEREGYTFHVEQPPFSREFLNELRQVSDEWLGRKKEKGFSLGFFQEDYLQKAPIAVLKSEEGEIVAFMNIMPMYREGEISIDLMRYSKKAPKGIMDALFIYLFQWGKEQGYTAFNMGMAPLSNVGLAAVIFNNVSYMFSGLRSFKEKYKPVWRGKYLAYRKNRSLPVTMILVTRLIGRR 848
                                   532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782|      802 ||    814       824       834       844    
                                                                                                                                                                                                                                                                                             782|        804|                                         
                                                                                                                                                                                                                                                                                              793         807
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4V36)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4V36)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4V36)

(-) Gene Ontology  (6, 6)

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    Pro A:670 - Pro A:671   [ RasMol ]  
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  4v36
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 Related Entries

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(-) Related Entries Specified in the PDB File

4v34 THE STRUCTURE OF A-PGS FROM PSEUDOMONAS AERUGINOSA ( SEMET DERIVATIVE)
4v35 THE STRUCTURE OF A-PGS FROM PSEUDOMONAS AERUGINOSA