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(-) Description

Title :  THE STRUCTURE OF A-PGS FROM PSEUDOMONAS AERUGINOSA (SEMET DERIVATIVE)
 
Authors :  J. Krausze, S. Hebecker, T. Hasenkampf, D. W. Heinz, J. Moser
Date :  16 Oct 14  (Deposition) - 19 Aug 15  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Sad, Trna-Dependent Aminoacylation, Bacterial Resistance Proteins, A-Pgs, Lipid Homeostasis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Hebecker, J. Krausze, T. Hasenkampf, J. Schneider, M. Groenewold, J. Reichelt, D. Jahn, D. W. Heinz, J. Moser
Structures Of Two Bacterial Resistance Factors Mediating Trna-Dependent Aminoacylation Of Phosphatidylglycerol With Lysine Or Alanine.
Proc. Natl. Acad. Sci. Usa V. 112 10691 2015
PubMed-ID: 26261323  |  Reference-DOI: 10.1073/PNAS.1511167112

(-) Compounds

Molecule 1 - ALANYL-TRNA-DEPENDENT L-ALANYL- PHOPHATIDYLGLYCEROL SYNTHASE
    Atcc: ATCC 1569
    Chains: A
    EC Number: 2.3.2.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET52B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: SOLUBLE DOMAIN, UNP RESIDUES 543-881
    Mutation: YES
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Other Details: SELENO-METHIONINE DERIVATIVE
    Strain: PAO1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric/Biological Unit (3, 14)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2MSE9Mod. Amino AcidSELENOMETHIONINE
3SO42Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:850BINDING SITE FOR RESIDUE CL A 1877
2AC2SOFTWAREGLU A:640BINDING SITE FOR RESIDUE CL A 1881
3AC3SOFTWARELYS A:775BINDING SITE FOR RESIDUE CL A 1878
4AC4SOFTWAREARG A:826 , TYR A:831 , ASN A:832 , PHE A:833 , GLN A:834BINDING SITE FOR RESIDUE SO4 A 1879
5AC5SOFTWAREARG A:562 , ARG A:565 , HIS A:566BINDING SITE FOR RESIDUE SO4 A 1880

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4V34)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4V34)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4V34)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4V34)

(-) Exons   (0, 0)

(no "Exon" information available for 4V34)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:323
                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh..hhhhhhhhhh..eeee......eeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhh.eeeeeeeeeeeee.........hhhhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhh........hhhhhh..eeeeeee..eeeeeeeee......eeeeeeeee......hhhhhhhhhhhhhhhhhh..eeeeeeee.hhh......hhhhhhhhhh.ee..ee....hhhhhhhhhh.eeeeeeeeee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4v34 A 546 PPAIREPNAEELQRAARIIRHSDQPDGGLALTGDKALLFHESDDAFLmYARRGRSmIALYDPIGPAmQRAELIWQFRDLCDLHHARPVFYQVRAENLPFYmDIGLTALKLGEEARVDLLRFDLENAGAAmKDLRYTWNRGQRDGLALEFHEPGQAPLDELKAISDAWKGFSLGRFTPAYLNFFRIAIVRHQGKPVAFANLLETDSRELASLDLmRVHPDAPKLTmEFLmLGLILHYKAQGHARFSLGmVPLAGLQPRRGAPLTQRLGALVFRRGEQFYNFQGLRRFKDKFQPDWEPRYLAVPAGLDPLVALADTAALIAGGLT 876
                                   555       565       575       585       595     | 605      |615       625       635       645|      655       665       675       685       695       705      |723       733       743       753       763   |   773    |  783       793       803       813       823       833       843       853       863       873   
                                                                         593-MSE 601-MSE    612-MSE                           646-MSE                      675-MSE                              712|                                           767-MSE    778-MSE                801-MSE                                                                       
                                                                                                                                                                                                 721                                                          782-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4V34)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4V34)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4V34)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  4v34
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9I537_PSEAE | Q9I537: 4v35

(-) Related Entries Specified in the PDB File

4v35 THE STRUCTURE OF A-PGS FROM PSEUDOMONAS AERUGINOSA
4v36 THE STRUCTURE OF L-PGS FROM BACILLUS LICHENIFORMIS