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(-) Description

Title :  THE STRUCTURE OF A-PGS FROM PSEUDOMONAS AERUGINOSA
 
Authors :  J. Krausze, S. Hebecker, T. Hasenkampf, D. W. Heinz, J. Moser
Date :  16 Oct 14  (Deposition) - 19 Aug 15  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Trna-Dependent Aminoacylation, Bacterial Resistance Proteins, A-Pgs, Lipid Homeostasis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Hebecker, J. Krausze, T. Hasenkampf, J. Schneider, M. Groenewold, J. Reichelt, D. Jahn, D. W. Heinz, J. Moser
Structures Of Two Bacterial Resistance Factors Mediating Trna-Dependent Aminoacylation Of Phosphatidylglycerol With Lysine Or Alanine.
Proc. Natl. Acad. Sci. Usa V. 112 10691 2015
PubMed-ID: 26261323  |  Reference-DOI: 10.1073/PNAS.1511167112

(-) Compounds

Molecule 1 - ALANYL-TRNA-DEPENDENT L-ALANYL- PHOPHATIDYLGLYCEROL SYNTHASE
    Atcc: ATCC 1569
    Chains: A
    EC Number: 2.3.2.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET52B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: SOLUBLE DOMAIN, UNP RESIDUES 543-881
    Mutation: YES
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: PAO1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 16)

Asymmetric/Biological Unit (6, 16)
No.NameCountTypeFull Name
1ACT7Ligand/IonACETATE ION
2CA1Ligand/IonCALCIUM ION
3CL2Ligand/IonCHLORIDE ION
4GOL3Ligand/IonGLYCEROL
5NA1Ligand/IonSODIUM ION
6SO42Ligand/IonSULFATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:826 , TYR A:831 , ASN A:832 , PHE A:833 , GLN A:834BINDING SITE FOR RESIDUE SO4 A1873
02AC2SOFTWAREARG A:562 , ARG A:565 , HIS A:566BINDING SITE FOR RESIDUE SO4 A1874
03AC3SOFTWAREGLN A:569 , ARG A:614 , ARG A:638 , GLU A:640 , ASN A:641 , HOH A:2024 , HOH A:2050BINDING SITE FOR RESIDUE GOL A1875
04AC4SOFTWAREPRO A:610 , ALA A:611 , ARG A:614BINDING SITE FOR RESIDUE GOL A1876
05AC5SOFTWAREGLY A:827 , GLU A:828 , HOH A:2095 , HOH A:2110BINDING SITE FOR RESIDUE ACT A1877
06AC6SOFTWAREALA A:548 , ARG A:596 , HIS A:628BINDING SITE FOR RESIDUE ACT A1878
07AC7SOFTWAREARG A:599BINDING SITE FOR RESIDUE ACT A1879
08AC8SOFTWAREHOH A:2067BINDING SITE FOR RESIDUE ACT A1880
09AC9SOFTWAREARG A:826 , GLY A:827 , GLU A:828 , HOH A:2111BINDING SITE FOR RESIDUE ACT A1881
10BC1SOFTWAREGLN A:834 , GLY A:835BINDING SITE FOR RESIDUE ACT A1882
11BC2SOFTWAREPRO A:774 , LYS A:775BINDING SITE FOR RESIDUE ACT A1883
12BC3SOFTWAREARG A:622BINDING SITE FOR RESIDUE CA A1884
13BC4SOFTWAREGLU A:616BINDING SITE FOR RESIDUE NA A1885
14BC5SOFTWAREARG A:679BINDING SITE FOR RESIDUE CL A1886
15BC6SOFTWAREARG A:737BINDING SITE FOR RESIDUE CL A1887

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4V35)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4V35)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4V35)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4V35)

(-) Exons   (0, 0)

(no "Exon" information available for 4V35)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:321
                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh..hhhhhhhhhh..eeee......eeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhh.eeeeeeeeeeeee.........hhhhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhh..........hhhhhh..eeeeeee..eeeeeeeee......eeeeeeeee......hhhhhhhhhhhhhhhhh...eeeeeeee.hhh......hhhhhhhhhh.ee..ee....hhhhhhhh...eeeeeeeeee....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4v35 A 546 PPAIREPNAEELQRAARIIRHSDQPDGGLALTGDKALLFHESDDAFLMYARRGRSMIALYDPIGPAMQRAELIWQFRDLCDLHHARPVFYQVRAENLPFYMDIGLTALKLGEEARVDLLRFDLENAGAAMKDLRYTWNRGQRDGLALEFHEPGQAPLDELKAISDAWLEKGFSLGRFTPAYLNFFRIAIVRHQGKPVAFANLLETDSRELASLDLMRVHPDAPKLTMEFLMLGLILHYKAQGHARFSLGMVPLAGLQPRRGAPLTQRLGALVFRRGEQFYNFQGLRRFKDKFQPDWEPRYLAVPAGLDPLVALADTAALIA 872
                                   555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871 
                                                                                                                                                                                                 713|                                                                                                                                                        
                                                                                                                                                                                                  720
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4V35)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4V35)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4V35)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  4v35
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  Q9I537_PSEAE | Q9I537
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9I537_PSEAE | Q9I537: 4v34

(-) Related Entries Specified in the PDB File

4v34 THE STRUCTURE OF A-PGS FROM PSEUDOMONAS AERUGINOSA ( SEMET DERIVATIVE)
4v36 THE STRUCTURE OF L-PGS FROM BACILLUS LICHENIFORMIS