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(-) Description

Title :  MONOMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2.1 A RESOLUTION
 
Authors :  M. Zuehlsdorf, S. Werten, G. J. Palm, W. Hinrichs
Date :  18 Sep 14  (Deposition) - 15 Jul 15  (Release) - 22 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hydrolase, Assemblin, Serine Protease, Protease, Suid, Prv, Herpes, Herpes Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Zuehlsdorf, S. Werten, B. G. Klupp, G. J. Palm, T. Mettenleiter, W. Hinrichs
Dimerization-Induced Allosteric Changes Of The Oxyanion-Hole Loop Activate The Pseudorabies Virus Assemblin Pul26N, A Herpesvirus Serine Protease
Plos Pathog. V. 11 5045 2015
PubMed-ID: 26161660  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1005045

(-) Compounds

Molecule 1 - UL26
    Chains: A, B
    EC Number: 3.4.21.97
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET28A
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 1-224
    Organism Common: PSEUDORABIES VIRUS
    Organism Scientific: SUID HERPESVIRUS 1
    Organism Taxid: 10345
    Other Details: N-TERMINAL (HIS)6-TAG WITH THROMBIN-LINKER
    Synonym: PSEUDORABIES VIRUS PROTEASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4V0T)

(-) Sites  (0, 0)

(no "Site" information available for 4V0T)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4V0T)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:31 -Pro A:32
2Leu B:31 -Pro B:32

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4V0T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4V0T)

(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.........hhhhhhhhh......eeee......eeeeeeeeeee..eeeeeeee...hhhhhhhhhhh.........hhhhhhhhhhhhhh.eeeeee.............eeeeeee.......ee.eee.hhhhhhh.....hhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4v0t A   1 MGPVYVSGYLALYDRLALTREIVAAALPPAGPLPINIDHRPRCDIGAVLAVVDDDRGPFFLGVVNCPQLGAVLARAVGPDFFGDMRLSDEERLLYLLSNYLPSASLSSRRLAPGEAPDETLFAHVALCVIGRRVGTIVVYDASPEAAVAPFRQLSARARSELLARAAESPDRERVWHMSEEALTRALLSTAVNNMLLRDRWELVAARRREAGVRGHTYLQ 224
                                    10    ||  24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224
                                         15|                                                                                                                                                                                                            
                                          20                                                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee........hhhhhhhhh......eeee......eeeeeeeeeee..eeeeeeee...hhhhhhhhhhh.........hhhhhhhhhhhhhh.eeeeee.............eeeeeee.......ee.eee.hhhhhhh.....hhhhhhhhhhhhhhh.........hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4v0t B   1 MGPVYVSGYLALYELALTREIVAAALPPAGPLPINIDHRPRCDIGAVLAVVDDDRGPFFLGVVNCPQLGAVLARAVGPDFFGDMRLSDEERLLYLLSNYLPSASLSSRRLAPGEAPDETLFAHVALCVIGRRVGTIVVYDASPEAAVAPFRQLSARARSELLARAAESPDRERVWHMSEEALTRALLSNNMLLRDRWELVAARRREAGVRGHTYL 223
                                    10  ||    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       198       208       218     
                                       13|                                                                                                                                                                           193|                          
                                        19                                                                                                                                                                            197
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4V0T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4V0T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4V0T)

(-) Gene Ontology  (8, 8)

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    Leu A:31 - Pro A:32   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SCAF_SUHVK | Q83417: 4cx8 4v07 4v08

(-) Related Entries Specified in the PDB File

4cx8 MONOMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2.5 A RESOLUTION
4v07 DIMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2.1 A RESOLUTION
4v08 INHIBITED DIMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2 A RESOLUTION