4V07 - JenaLib

Title :   DIMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2.1 A RESOLUTION

Authors :   M. Zuehlsdorf, S. Werten, G. J. Palm, W. Hinrichs

Date :   11 Sep 14 (Deposition) - 15 Jul 15 (Release) - 22 Jul 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym./Biol. Unit : A,B

Keywords :   Viral Protein, Assemblin, Ul26P, Serine Protease, Prv, Herpes, Herpes Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Zuehlsdorf, S. Werten, B. G. Klupp, G. J. Palm, T. Mettenleiter, W. Hinrichs
Dimerization-Induced Allosteric Changes Of The Oxyanion-Hole Loop Activate The Pseudorabies Virus Assemblin Pul26N, A Herpesvirus Serine Protease
Plos Pathog. V. 11 5045 2015
PubMed-ID: 26161660 | Reference-DOI: 10.1371/JOURNAL.PPAT.1005045

Compounds

Molecule 1 - UL26
	Chains	:	A, B
	EC Number	:	3.4.21.97
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector	:	PET28A
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 1-224
	Organism Common	:	PSEUDORABIES VIRUS
	Organism Scientific	:	SUID HERPESVIRUS 1
	Organism Taxid	:	10345
	Other Details	:	N-TERMINAL (HIS)6-TAG WITH THROMBIN-LINKER
	Synonym	:	PSEUDORABIES VIRUS PROTEASE

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (10, 10)

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:203 , HOH A:2054 , ASP B:203 , ARG B:204 , TRP B:205	BINDING SITE FOR RESIDUE CL B1225
02	AC2	SOFTWARE	ARG A:161 , HOH A:2040 , SER B:183	BINDING SITE FOR RESIDUE CL A1219
03	AC3	SOFTWARE	ASP A:203 , ARG A:204 , TRP A:205 , HOH A:2059 , ASP B:203 , HOH B:2063	BINDING SITE FOR RESIDUE CL A1220
04	AC4	SOFTWARE	SER A:109 , ARG A:136 , HOH A:2029	BINDING SITE FOR RESIDUE CL A1221
05	AC5	SOFTWARE	SER B:109 , ARG B:136 , HOH B:2040	BINDING SITE FOR RESIDUE CL B1226
06	AC6	SOFTWARE	ALA A:54 , VAL A:55 , ARG A:169	BINDING SITE FOR RESIDUE CL A1222
07	AC7	SOFTWARE	PRO B:33 , ALA B:54 , VAL B:55 , ARG B:169	BINDING SITE FOR RESIDUE CL B1227
08	AC8	SOFTWARE	ASP A:145 , HOH A:2032 , HOH A:2033 , HOH A:2034 , HOH A:2063 , HOH A:2064 , ASP B:145	BINDING SITE FOR RESIDUE MG A1223
09	PLA	AUTHOR	HIS A:43 , SER A:109 , HIS A:128	PROTEOLYTIC SITE
10	PLB	AUTHOR	HIS B:43 , SER B:109 , HIS B:128	PROTEOLYTIC SITE

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.............hhhhhhhhh......eeee......eeeeeeeeeee..eeeeeeee.hhhhhhhhhhhh..........hhhhhhhhhhhhhh.eeeeee.............eeeeeee..........eee.hhhhhhh.....hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4v07 A   1 MGPVYVSGYLALYDRDGGELALTREIVAAALPPAGPLPINIDHRPRCDIGAVLAVVDDDRGPFFLGVVNCPQLGAVLARAVGPDFFGDMRLSDEERLLYLLSNYLPSASLSSRRLAPGEAPDETLFAHVALCVIGRRVGTIVVYDASPEAAVAPFRQLSARARSELLARAAESPDRERVWHMSEEALTRALLSTAVNNMLLRDRWELVAARRREAGVR 218
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Chain B from PDB  Type:PROTEIN  Length:224
                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.............hhhhhhhhh......eeee......eeeeeeeeeee..eeeeeeee..hhhhhhhhhhh..........hhhhhhhhhhhhhh.eeeeee.............eeeeeee..........eee.hhhhhhh.....hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4v07 B   1 MGPVYVSGYLALYDRDGGELALTREIVAAALPPAGPLPINIDHRPRCDIGAVLAVVDDDRGPFFLGVVNCPQLGAVLARAVGPDFFGDMRLSDEERLLYLLSNYLPSASLSSRRLAPGEAPDETLFAHVALCVIGRRVGTIVVYDASPEAAVAPFRQLSARARSELLARAAESPDRERVWHMSEEALTRALLSTAVNNMLLRDRWELVAARRREAGVRGHTYLQ 224
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

4cx8	MONOMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2.5 A RESOLUTION
4v08	INHIBITED DIMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2 A RESOLUTION
4v0t	MONOMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2.1 A RESOLUTION

Description