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(-) Description

Title :  MONOMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2.5 A RESOLUTION
 
Authors :  M. Zuehlsdorf, S. Werten, G. J. Palm, W. Hinrichs
Date :  04 Apr 14  (Deposition) - 20 May 15  (Release) - 12 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.53
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Viral Protein, Assemblin, Ul26, Prv (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Zuhlsdorf, S. Werten, B. G. Klupp, G. J. Palm, T. C. Mettenleiter, W. Hinrichs
Dimerization-Induced Allosteric Changes Of The Oxyanion- Hole Loop Activate The Pseudorabies Virus Assemblin Pul26N, A Herpesvirus Serine Protease.
Plos Pathog. V. 11 5045 2015
PubMed-ID: 26161660  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1005045

(-) Compounds

Molecule 1 - PSEUDORABIES VIRUS PROTEASE
    Chains: A, B
    EC Number: 3.4.21.97
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET-28A
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 1-224
    Organism Common: PSEUDORABIES VIRUS
    Organism Scientific: SUID HERPESVIRUS 1
    Organism Taxid: 10345
    Other Details: N-TERMINAL (HIS)6-TAG WITH THROMBIN-LINKER

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4CX8)

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1PLSAUTHORHIS A:43 , SER A:109 , HIS A:128PROTEOLYTIC SITE

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CX8)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:31 -Pro A:32
2Leu B:31 -Pro B:32

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CX8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CX8)

(-) Exons   (0, 0)

(no "Exon" information available for 4CX8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee........hhhhhhhhh.....eeeee......eeeeeeeeee....eeeeeee...hhhhhhhhhhh.........hhhhhhhhhhhhhh.eeeeee.............eeeeeee.......ee.eee.hhhhhhh.....hhhhhhhhhhhhhh..........hhhhhhhhh.hhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cx8 A   2 GPVYVSGYLALYDRALTREIVAAALPPAGPLPINIDHRPRCDIGAVLAVVDDDRGPFFLGVVNCPQLGAVLARAVGPDFFGDMRLSDEERLLYLLSNYLPSASLSSRRLAPGEAPDETLFAHVALCVIGRRVGTIVVYDASPEAAVAPFRQLSARARSELLARAAESPDRERVWHMSEEALTRALLMLLRDRWELVAARRREAGVRGHTYLQ 224
                                    11   ||   26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186     ||202       212       222  
                                        15|                                                                                                                                                                        192|                         
                                         21                                                                                                                                                                         199                         


Chain B from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee......hhhhhhhhh......eeee......eeeeeeeeeee..eeeeeeee...hhhhhhhhhhh.........hhhhhhhhhhhhhh.eeeeee.............eeeeeee.......eeeeee.hhhhhhh.....hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cx8 B   2 GPVYVSGYLALYALTREIVAAALPPAGPLPINIDHRPRCDIGAVLAVVDDDRGPFFLGVVNCPQLGAVLARAVGPDFFGDMRLSDEERLLYLLSNYLPSASLSSRRLAPGEAPDETLFAHVALCVIGRRVGTIVVYDASPEAAVAPFRQLSARARSELLARAAESPDRERVWHMSEEALTRALLRDRWELVAARRREAGVRGHTYL 223
                                    11 ||     28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188  ||   207       217      
                                      13|                                                                                                                                                                       191|                      
                                       21                                                                                                                                                                        201
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CX8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CX8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CX8)

(-) Gene Ontology  (8, 8)

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    Leu A:31 - Pro A:32   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SCAF_SUHVK | Q83417: 4v07 4v08 4v0t

(-) Related Entries Specified in the PDB File

4v07 DIMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2.1 A RESOLUTION
4v08 INHIBITED DIMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2 A RESOLUTION
4v0t MONOMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2.1 A RESOLUTION