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(-) Description

Title :  UCH-L5 IN COMPLEX WITH THE RPN13 DEUBAD DOMAIN
 
Authors :  D. D. Sahtoe, W. J. Van Dijk, F. El Oualid, R. Ekkebus, H. Ovaa, T. K. Six
Date :  18 Dec 14  (Deposition) - 04 Mar 15  (Release) - 25 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.82
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase, Deubiquitinating Enzyme, Dub, Proteasome (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. D. Sahtoe, W. J. Van Dijk, F. El Oualid, R. Ekkebus, H. Ovaa, T. K. Sixma
Mechanism Of Uch-L5 Activation And Inhibition By Deubad Domains In Rpn13 And Ino80G.
Mol. Cell V. 57 887 2015
PubMed-ID: 25702870  |  Reference-DOI: 10.1016/J.MOLCEL.2014.12.039

(-) Compounds

Molecule 1 - UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5
    ChainsA
    EC Number3.4.19.12
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPGEX-NKI-3C-LIC
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantROSETTA 2
    Expression System VectorPGEX VECTOR
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsISOFORM 3
    SynonymUCH-L5, UBIQUITIN C-TERMINAL HYDROLASE UCH37, UBIQUITIN THIOESTERASE L5
 
Molecule 2 - PROTEASOMAL UBIQUITIN RECEPTOR ADRM1
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPCDF-NKI-HIS-3C-LIC
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantROSETTA 2
    Expression System VectorPCDF VECTOR
    FragmentDEUBAD DOMAIN, RESIDUES 266-388
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Synonym110 KDA CELL MEMBRANE GLYCOPROTEIN, GP110, ADHESION-REGULATING MOLECULE 1, ARM-1, PROTEASOME REGULATORY PARTICLE NON-ATPASE 13, HRPN13, RPN13 HOMOLOG

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4UEM)

(-) Sites  (0, 0)

(no "Site" information available for 4UEM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UEM)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:47 -Pro A:48

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UEM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UEM)

(-) Exons   (0, 0)

(no "Exon" information available for 4UEM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh....eeeeee...hhhhhh....eeeeeeee...............hhhhhh......hhhhhhhhhhhhhhh........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh........eeeeeee..eeeeee......eeeee.....hhhhhhhhhhhhhhh.eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uem A   7 EWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKRFNLMAIVSDRKMIYEQKIAELQRQLAESMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKA 315
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146   ||  169       179       189       199       209||     225       235       254       264       274       284       294       304       314 
                                                                                                                                                                         150|                                           210|                        244|                                                             
                                                                                                                                                                          164                                            217                         254                                                             

Chain B from PDB  Type:PROTEIN  Length:98
                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 4uem B 287 DLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNN 384
                                   296       306       316       326       336       346       356       366       376        

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UEM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UEM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UEM)

(-) Gene Ontology  (36, 41)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Lys A:47 - Pro A:48   [ RasMol ]  
 

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  UCHL5_HUMAN | Q9Y5K5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ADRM1_HUMAN | Q161862kqz 2kr0 2l5v 2mkz 2nbk 2nbv 4uel 4wlq 4wlr 5irs 5v1y 5v1z
        UCHL5_HUMAN | Q9Y5K53a7s 3ihr 3rii 3ris 3tb3 4uel 4uf5 4uf6 4wlp

(-) Related Entries Specified in the PDB File

4uel UCH-L5 IN COMPLEX WITH UBIQUITIN-PROPARGYL BOUND TO THE RPN13 DEUBAD DOMAIN
4uf5 CRYSTAL STRUCTURE OF UCH-L5 IN COMPLEX WITH INHIBITORY FRAGMENT OF INO80G
4uf6 UCH-L5 IN COMPLEX WITH UBIQUITIN-PROPARGYL BOUND TO AN ACTIVATING FRAGMENT OF INO80G