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(-) Description

Title :  CRYSTAL STRUCTURE OF MUCH37-HRPN13 CTD COMPLEX
 
Authors :  C. W. Hemmis, C. P. Hill, R. Vanderlinden, F. G. Whitby
Date :  07 Oct 14  (Deposition) - 04 Mar 15  (Release) - 25 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Uch37 Rpn13 Proteasome Ino80 Dub (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. T. Vanderlinden, C. W. Hemmis, B. Schmitt, A. Ndoja, F. G. Whitby, H. Robinson, R. E. Cohen, T. Yao, C. P. Hill
Structural Basis For The Activation And Inhibition Of The Uch37 Deubiquitylase.
Mol. Cell V. 57 901 2015
PubMed-ID: 25702872  |  Reference-DOI: 10.1016/J.MOLCEL.2015.01.016

(-) Compounds

Molecule 1 - UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5
    Chains: A
    EC Number: 3.4.19.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: UCHL5, UCH37
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: UCH-L5,UBIQUITIN C-TERMINAL HYDROLASE UCH37,UBIQUITIN THIOESTERASE L5
 
Molecule 2 - PROTEASOMAL UBIQUITIN RECEPTOR ADRM1
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ADRM1, GP110
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 110 KDA CELL MEMBRANE GLYCOPROTEIN,GP110,ADHESION-REGULATING MOLECULE 1,ARM-1,PROTEASOME REGULATORY PARTICLE NON-ATPASE 13,HRPN13, RPN13 HOMOLOG

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4WLQ)

(-) Sites  (0, 0)

(no "Site" information available for 4WLQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WLQ)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Lys A:47 -Pro A:48
2His A:305 -Gln A:306
3Thr B:293 -Pro B:294

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WLQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WLQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4WLQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:292
                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhh....eeeee..............eeeeeeee..........ee...hhhhhh......hhhhhhhhhhhhhhh........hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.........eeeeeeee..eeeee.......eeeee.....hhhhhhhhhhhhhhhhhhh...eeeeeeeehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wlq A   6 GEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMTVLSAIQSEVARNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEK 314
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145    || 166       176       186       196       206       216       226       236       246||     262       272       282       292       302       312  
                                                                                                                                                                          150|                                                                                  247|                                                            
                                                                                                                                                                           162                                                                                   254                                                            


Chain B from PDB  Type:PROTEIN  Length:99
                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh...hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhh.hhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 4wlq B 286 VDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNN 384
                                   295       305       315       325       335       345       355       365       375
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WLQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WLQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WLQ)

(-) Gene Ontology  (36, 40)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 4wlq)
 
  Cis Peptide Bonds
    His A:305 - Gln A:306   [ RasMol ]  
    Lys A:47 - Pro A:48   [ RasMol ]  
    Thr B:293 - Pro B:294   [ RasMol ]  
 

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  4wlq
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  ADRM1_HUMAN | Q16186
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  UCHL5_MOUSE | Q9WUP7
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  3.4.19.12
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ADRM1_HUMAN | Q16186: 2kqz 2kr0 2l5v 2mkz 2nbk 2nbv 4uel 4uem 4wlr 5irs 5v1y 5v1z
        UCHL5_MOUSE | Q9WUP7: 4wlr

(-) Related Entries Specified in the PDB File

4wlp 4wlr