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(-) Description

Title :  CRYSTAL STRUCTURE OF UCH37-NFRKB INHIBITED DEUBIQUITYLATING COMPLEX
 
Authors :  C. W. Hemmis, C. P. Hill, R. Vanderlinden, F. G. Whitby
Date :  07 Oct 14  (Deposition) - 04 Mar 15  (Release) - 25 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Uch37 Nfrkb Proteasome Ino80 Dub (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. T. Vanderlinden, C. W. Hemmis, B. Schmitt, A. Ndoja, F. G. Whitby, H. Robinson, R. E. Cohen, T. Yao, C. P. Hill
Structural Basis For The Activation And Inhibition Of The Uch37 Deubiquitylase.
Mol. Cell V. 57 901 2015
PubMed-ID: 25702872  |  Reference-DOI: 10.1016/J.MOLCEL.2015.01.016

(-) Compounds

Molecule 1 - UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5
    Chains: A
    EC Number: 3.4.19.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: UCHL5, UCH37, AD-019, CGI-70
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: UCH-L5,UBIQUITIN C-TERMINAL HYDROLASE UCH37,UBIQUITIN THIOESTERASE L5
 
Molecule 2 - NUCLEAR FACTOR RELATED TO KAPPA-B-BINDING PROTEIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: NFRKB, INO80G
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DNA-BINDING PROTEIN R KAPPA-B,INO80 COMPLEX SUBUNIT G

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4WLP)

(-) Sites  (0, 0)

(no "Site" information available for 4WLP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WLP)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Lys A:47 -Pro A:48

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WLP)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:296
                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhh....eeeee....hhhhhhh...eeeeeeee..............hhhhhh.......hhhhhhhhhhhhhhh.........hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeeee..eeeeee......eeeee.....hhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wlp A   5 AGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNA 321
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144   ||  163       173       183       193       203       213       223       233       255       265       275       285       295       305       315      
                                                                                                                                                                         148|                                                                                241|                                                                   
                                                                                                                                                                          158                                                                                 254                                                                   


Chain B from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.....hhhhhhhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 4wlp B  40 EDLLEDPEIFFDVVSLSTWQEVLSDSQREHLQQFLPQFPEDSAEQQNELILALFSGENFRFGNPLHIAQKLFRDGHFNPEVVKYRQLCFKSQYKRYLNSQQQYFHRLLKQILAS 153
                                    49        59        69        79        89        99       109       119       129       139       149
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WLP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WLP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WLP)

(-) Gene Ontology  (32, 40)

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    Lys A:47 - Pro A:48   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NFRKB_HUMAN | Q6P4R8: 3u21 4uf5 4uf6
        UCHL5_HUMAN | Q9Y5K5: 3a7s 3ihr 3rii 3ris 3tb3 4uel 4uem 4uf5 4uf6

(-) Related Entries Specified in the PDB File

4wlq 4wlr