4TXV - JenaLib

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Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE MIXED DISULFIDE INTERMEDIATE BETWEEN THIOREDOXIN-LIKE TLPAS(C110S) AND SUBUNIT II OF CYTOCHROME C OXIDASE COXBPD (C233S)

Authors :   N. Quade, H. K. Abicht, H. Hennecke, R. Glockshuber

Date :   07 Jul 14 (Deposition) - 01 Oct 14 (Release) - 10 Dec 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Thioredoxin, Mixed Disulphide, Cytochrome C Oxidase, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. K. Abicht, M. A. Scharer, N. Quade, R. Ledermann, E. Mohorko, G. Capitani, H. Hennecke, R. Glockshuber
How Periplasmic Thioredoxin Tlpa Reduces Bacterial Copper Chaperone Scoi And Cytochrome Oxidase Subunit Ii (Coxb) Prior To Metallation.
J. Biol. Chem. V. 289 32431 2014
PubMed-ID: 25274631 | Reference-DOI: 10.1074/JBC.M114.607127

Molecule 1
	Chains	:	A, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 40-217
	Gene	:	TLPA, BLL1380
	Mutation	:	YES
	Organism Scientific	:	BRADYRHIZOBIUM DIAZOEFFICIENS
	Organism Taxid	:	224911
	Strain	:	JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110
	Synonym	:	CYTOCHROME C BIOGENESIS PROTEIN TLPA

Molecule 2 - CYTOCHROME C OXIDASE SUBUNIT 2
	Chains	:	B, D
	EC Number	:	1.9.3.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PPROEXHTA-HIS6-COXBPDC233S
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 123-264
	Gene	:	COXB, BLR1170
	Mutation	:	YES
	Organism Scientific	:	BRADYRHIZOBIUM DIAZOEFFICIENS
	Organism Taxid	:	224911
	Strain	:	JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 4TXV)

(no "Site" information available for 4TXV)

Asymmetric Unit

No.	Residues
1	A:45	-	A:190
2	A:107	-	B:229
3	C:45	-	C:190
4	C:107	-	D:229

Asymmetric Unit

No.	Residues
1	Met A:179	-	Pro A:180
2	Gln B:141	-	Trp B:142
3	Gln B:165	-	Pro B:166
4	Met C:179	-	Pro C:180
5	Gln D:141	-	Trp D:142

(no "SAP(SNP)/Variant" information available for 4TXV)

(no "PROSITE Motif" information available for 4TXV)

(no "Exon" information available for 4TXV)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhh..ee..........eee.....eee.hhhh..eeeeeee...hhhhhhhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhh.......ee...hhhhhhhhhh.......eeeee.....eeeee.......hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4txv A  41 GDPACRAAVATAQKIAPLAHGEVAALTMASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPSRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATG 215
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Chain B from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeeee..eeeee.......eeee................eeee...eeeeeeee....eeeeehhhheeeee.....eeeeee....eeee................eeeeehhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4txv B 123 FLELDVPKADLTIKATGKQWYWSYAYPDNGKFEFDSLMAQDKQPRLLGVDNEMVVPVNKVIRVQVTGADVIHAFALPAFGVKIDAIPGRLNETWFKAAKTGMFYGQCSELSGKDHAFMPIAIRVVEDKEFASWVETAKKKFA 264
                                   132       142       152       162       172       182       192       202       212       222       232       242       252       262

Chain C from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh..ee..........eee.....eee.hhhh..eeeeeee...hhhhhhhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhh......ee...hhhhhhhhhh....ee.eeeee.....eeeee.......hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4txv C  40 TGDPACRAAVATAQKIAPLAHGEVAALTMASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPSRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGKA 217
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209

Chain D from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeee..eeeee.......eeee.........eeee...eeeeeeee....eeeeehhhheeeee.....eeeeee....eeee..ee............eeeeehhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4txv D 126 LDVPKADLTIKATGKQWYWSYAYPDNGKFEFDSLMLLGVDNEMVVPVNKVIRVQVTGADVIHAFALPAFGVKIDAIPGRLNETWFKAAKTGMFYGQCSELSGKDHAFMPIAIRVVEDKEFASWVETAKKKFAS 265
                                   135       145       155    || 172       182       192       202       212       222       232       242       252       262   
                                                            160|                                                                                                 
                                                             168

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4TXV)

(no "CATH Domain" information available for 4TXV)

(no "Pfam Domain" information available for 4TXV)

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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 4txv)

	Sites
(no "Sites" information available for 4txv)

	Cis Peptide Bonds
		Gln B:141 - Trp B:142	[ RasMol ]
		Gln B:165 - Pro B:166	[ RasMol ]
		Gln D:141 - Trp D:142	[ RasMol ]
		Met A:179 - Pro A:180	[ RasMol ]
		Met C:179 - Pro C:180	[ RasMol ]

Biological Units
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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	TLPA_BRADU \| P43221
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UniProtKB/Swiss-Prot
	TLPA_BRADU \| P43221	:	1jfu 4txo
UniProtKB/TrEMBL
	H7C6E5_BRADU \| H7C6E5	:	4w9z

4txo	CRYSTAL STRUCTURE OF THE MIXED DISULFIDE COMPLEX OF THIOREDOXIN- LIKE TLPAS(C110S) AND COPPER CHAPERONE SCOIS(C74S)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (4, 4)

Cis Peptide Bonds (5, 5)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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SCOP Domains (0, 0)

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Gene Ontology (20, 25)

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