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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PERIPLASMIC DOMAIN OF SUBUNIT II OF CYTOCHROME OXIDASE (COXB) OF BRADYRHIZOBIUM JAPONICUM
 
Authors :  N. Quade, H. K. Abicht, H. Hennecke, R. Glockshuber
Date :  28 Aug 14  (Deposition) - 09 Sep 15  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase, Cua, Respiration (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Quade, H. K. Abicht, H. Hennecke, R. Glockshuber
Crystal Structure Of The Periplasmic Domain Of Subunit Ii O Cytochrome Oxidase (Coxb) Of Bradyrhizobium Japonicum
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CYTOCHROME C OXIDASE SUBUNIT 2
    Chains: A
    EC Number: 1.9.3.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A-COXBPD
    Expression System Taxid: 469008
    Gene: COXB, BLR1170
    Organism Scientific: BRADYRHIZOBIUM DIAZOEFFICIENS
    Organism Taxid: 224911
    Strain: JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1CU2Ligand/IonCOPPER (II) ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:194 , CYS A:229 , CYS A:233 , MET A:240 , CU A:302binding site for residue CU A 301
2AC2SOFTWARECYS A:229 , GLU A:231 , CYS A:233 , HIS A:237 , CU A:301binding site for residue CU A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4W9Z)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gln A:141 -Trp A:142
2Gln A:165 -Pro A:166

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4W9Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4W9Z)

(-) Exons   (0, 0)

(no "Exon" information available for 4W9Z)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeeee..eeeee.......eeee................eeee...eeeeeeee....eeeeehhhheeeee.....eeeeee....eeeeeee......hhhhh.eeeeeehhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4w9z A 127 MVPKADLTIKATGKQWYWSYAYPDNGKFEFDSLMAQDKQPRLLGVDNEMVVPVNKVIRVQVTGADVIHAFALPAFGVKIDAIPGRLNETWFKAAKTGMFYGQCSELCGKDHAFMPIAIRVVEDKEFASWVETAKKKFA 264
                                   136       146       156       166       176       186       196       206       216       226       236       246       256
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4W9Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4W9Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4W9Z)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        H7C6E5_BRADU | H7C6E5: 4txv

(-) Related Entries Specified in the PDB File

4txv