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(-) Description

Title :  CRYSTAL STRUCTURE OF THE MIXED DISULFIDE COMPLEX OF THIOREDOXIN-LIKE TLPAS(C110S) AND COPPER CHAPERONE SCOIS(C74S)
 
Authors :  M. A. Scharer, H. K. Abicht, R. Glockshuber, H. Hennecke
Date :  04 Jul 14  (Deposition) - 01 Oct 14  (Release) - 11 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  C,D  (1x)
Biol. Unit 2:  A,B  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Mixed Disulfide, Soluble Domain Of Membrane Protein, Thioredoxin Fold, Copper Protein, Protein Binding, Oxidodreductase/Copper Binding Protein, Oxidodreductase-Copper Binding Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. K. Abicht, M. A. Scharer, N. Quade, R. Ledermann, E. Mohorko, G. Capitani, H. Hennecke, R. Glockshuber
How Periplasmic Thioredoxin Tlpa Reduces Bacterial Copper Chaperone Scoi And Cytochrome Oxidase Subunit Ii (Coxb) Prior To Metallation.
J. Biol. Chem. V. 289 32431 2014
PubMed-ID: 25274631  |  Reference-DOI: 10.1074/JBC.M114.607127

(-) Compounds

Molecule 1
    Chains: C, A, E, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PMAL-P/TLPASC110S
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 38-221
    Gene: TLPA, BLL1380
    Mutation: YES
    Organism Scientific: BRADYRHIZOBIUM DIAZOEFFICIENS USDA 110
    Organism Taxid: 224911
    Synonym: CYTOCHROME C BIOGENESIS PROTEIN TLPA
 
Molecule 2 - BLR1131 PROTEIN
    Chains: D, B, F, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PRJ8336
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 30-196
    Gene: BLR1131
    Mutation: YES
    Organism Scientific: BRADYRHIZOBIUM DIAZOEFFICIENS USDA 110
    Organism Taxid: 224911
    Synonym: SCOI S

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x):   CD    
Biological Unit 2 (1x): AB      
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1NA2Ligand/IonSODIUM ION
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
3SCN2Ligand/IonTHIOCYANATE ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
3SCN1Ligand/IonTHIOCYANATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
2PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
3SCN1Ligand/IonTHIOCYANATE ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
2PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
3SCN-1Ligand/IonTHIOCYANATE ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
2PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
3SCN-1Ligand/IonTHIOCYANATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS B:61 , ARG C:111 , HOH C:401binding site for residue SCN C 301
2AC2SOFTWARELYS B:58 , SER B:59 , HOH B:304 , VAL C:108 , ARG C:111 , LYS C:112 , PHE C:147binding site for residue PEG C 302
3AC3SOFTWAREARG A:111 , THR D:56binding site for residue SCN A 301
4AC4SOFTWAREARG A:139binding site for residue NA A 302
5AC5SOFTWARESER B:74 , PRO B:75 , ASP B:76 , THR B:153 , ASP B:157binding site for residue NA B 201

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1A:45 -A:190
2A:107 -B:78
3C:45 -C:190
4C:107 -D:78
5E:45 -E:190
6E:107 -F:78
7G:45 -G:190
8G:107 -H:78

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Met C:179 -Pro C:180
2Gly C:215 -Lys C:216
3Met A:179 -Pro A:180
4Lys B:154 -Asp B:155
5Met E:179 -Pro E:180
6Ala F:39 -Ala F:40
7Lys F:154 -Asp F:155
8Asp F:155 -Gly F:156
9Met G:179 -Pro G:180
10Thr G:214 -Gly G:215
11Lys H:154 -Asp H:155
12Asp H:155 -Gly H:156

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TXO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TXO)

(-) Exons   (0, 0)

(no "Exon" information available for 4TXO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhh..ee..........eee.....eee.hhhh..eeeeeee...hhhhhhhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhh.......ee...hhhhhhhhhh.......eeeee.....eeeeee......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4txo A  39 PTGDPACRAAVATAQKIAPLAHGEVAALTMASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPSRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATG 215
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       


Chain B from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee.....eee........eeeeee.........hhhhhhhhhhhhhhhhhhhheeeeee......hhhhhhhhhh.....eeee..hhhhhhhhhhhh...eeeee.....eeeee....eee.....eeee.....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4txo B  39 AAIGGPFQLTDQNGKAVTDKSLKGKPTLIFFGYTHSPDVCPTSLFEISEVLRAMGKDADKVNAIFISVDPERDTPATMKNYLSSFDPHLEGLSGDPAEIAKVITSYRVYAKKVPTKDGDYTMDHTALIYLMDRDGRFVSPFNLKRTPEEAAADLKRYL 196
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188        


Chain C from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh..ee..........eee.....eee.hhhh..eeeeeee...hhhhhhhhhhhhhhh.......eeeeeee.....hhhhhhhhhhh.......ee...hhhhhhhhhh.......eeeee.....eeeeee......hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4txo C  40 TGDPACRAAVATAQKIAPLAHGEVAALTMASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPSRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGK 216
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       


Chain D from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee.....eee........eeeeee.........hhhhhhhhhhhhhhhhhhhheeeeee......hhhhhhhhhh......eee..hhhhhhhhhhhh...eeeee.....eeeee...eeee.....eeee.....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4txo D  38 PAAIGGPFQLTDQNGKAVTDKSLKGKPTLIFFGYTHSPDVCPTSLFEISEVLRAMGKDADKVNAIFISVDPERDTPATMKNYLSSFDPHLEGLSGDPAEIAKVITSYRVYAKKVPTKDGDYTMDHTALIYLMDRDGRFVSPFNLKRTPEEAAADLKRYL 196
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187         


Chain E from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhh..ee..........eee.....eee.hhhh..eeeeeee...hhhhhhhhhhhhhhh.......eeeeeee......hhhhhhhhhh.......ee...hhhhhhhhhh.......eeeee.....eeeeee......hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4txo E  39 PTGDPACRAAVATAQKIAPLAHGEVAALTMASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPSRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGK 216
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208        


Chain F from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee....eee........eeeeee.........hhhhhhhhhhhhhhhhhhhheeeeee......hhhhhhhhhhhh...eeeee.hhhhhhhhhhhhh..eeeeee...eeeeee....eee.....eeee.....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4txo F  39 AAIGGPFQLTDQNGKAVTDKSLKGKPTLIFFGYTHSPDVCPTSLFEISEVLRAMGKDADKVNAIFISVDPERDTPATMKNYLSSFDPHLEGLSGDPAEIAKVITSYRVYAKKVPTKDGDYTMDHTALIYLMDRDGRFVSPFNLKRTPEEAAADLKRYL 196
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188        


Chain G from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh..ee..........eee.....eee.hhhh..eeeeeee...hhhhhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhh.......ee...hhhhhhhhhh.......eeeee.....eeeeee......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4txo G  40 TGDPACRAAVATAQKIAPLAHGEVAALTMASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPSRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATG 215
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209      


Chain H from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee.....eee........eeeeee....hhhhhhhhhhhhhhhhhhhheeeeee......hhhhhhhhhh.....eeee..hhhhhhhhhhhh...eeeee.....eeeee....eee.....eeee.....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4txo H  40 AIGGPFQLTDQNGKAVTDKSLKGKPTLIFFGYTCPTSLFEISEVLRAMGKDADKVNAIFISVDPERDTPATMKNYLSSFDPHLEGLSGDPAEIAKVITSYRVYAKKVPTKDGDYTMDHTALIYLMDRDGRFVSPFNLKRTPEEAAADLKRYL 196
                                    49        59        69  ||    84        94       104       114       124       134       144       154       164       174       184       194  
                                                           72|                                                                                                                      
                                                            78
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TXO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TXO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TXO)

(-) Gene Ontology  (14, 17)

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  TLPA_BRADU | P43221
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        TLPA_BRADU | P43221: 1jfu 4txv
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(-) Related Entries Specified in the PDB File

4txv