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(-) Description

Title :  DROSOPHILA STEM-LOOP BINDING PROTEIN COMPLEXED WITH HISTONE MRNA STEM-LOOP
 
Authors :  J. Zhang
Date :  25 Jun 14  (Deposition) - 16 Jul 14  (Release) - 17 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.08
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Slbp, Histone Mrna Stem-Loop, Rna Binding Protein-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zhang, D. Tan, E. F. Derose, L. Perera, Z. Dominski, W. F. Marzluff, L. Tong, T. M. Hall
Molecular Mechanisms For The Regulation Of Histone Mrna Stem-Loop-Binding Protein By Phosphorylation.
Proc. Natl. Acad. Sci. Usa V. 111 E2937 2014
PubMed-ID: 25002523  |  Reference-DOI: 10.1073/PNAS.1406381111

(-) Compounds

Molecule 1 - HISTONE RNA HAIRPIN-BINDING PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI #1/H766
    Expression System Strain: BL21 (DE3) CODONPLUS
    Expression System Taxid: 1354003
    Fragment: UNP RESIDUES 184-276
    Gene: SLBP, CG11886
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synonym: HISTONE STEM-LOOP-BINDING PROTEIN
 
Molecule 2 - RNA (26-MER)
    Chains: D, C
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREG D:8 , C D:25binding site for residue CA D 101
2AC2SOFTWAREA D:6 , A D:7binding site for residue CA D 102
3AC3SOFTWAREC D:26binding site for residue CA D 103
4AC4SOFTWAREA C:6 , A C:7binding site for residue CA C 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TUX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4TUX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:71
                                                                                                       
               SCOP domains ----------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 4tux A 186 SYTEADPAILSRRQKQIDYGKNTAAYERYVEMVPKDERTRHPRTPNKYGKYSRRAFDGLVKIWRKSLHIYD 257
                                   195       205       215       225|      236       246       256 
                                                                 225|                              
                                                                  227                              


Chain B from PDB  Type:PROTEIN  Length:67
                                                                                                   
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 4tux B 186 SYTEADPAILSRRQKQIDYGKNTAAYERYVEMVPKDEHPRTPNKYGKYSRRAFDGLVKIWRKSLHIY 256
                                   195       205       215      |229       239       249       
                                                              222|                             
                                                               227                             


Chain C from PDB  Type:RNA  Length:25
                                                         
                 4tux C   1 GGCCAAAGGCCCUUUUCAGGGCCAC  25
                                    10        20     


Chain D from PDB  Type:RNA  Length:26
                                                          
                 4tux D   1 GGCCAAAGGCCCUUUUCAGGGCCACC  26
                                    10        20
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TUX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TUX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TUX)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)

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  4tux
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SLBP_DROME | Q9VAN6: 4tuw 4tv0

(-) Related Entries Specified in the PDB File

4tuw 4tv0