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(-) Description

Title :  CRYSTAL STRUCTURE OF DEATH-ASSOCIATED PROTEIN KINASE 1 WITH A CRUCIAL PHOSPHOMIMICKING MUTATION
 
Authors :  K. Temmerman, B. Simon, M. Wilmanns
Date :  28 May 14  (Deposition) - 10 Jun 15  (Release) - 10 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Death-Associated, Calmodulin Binding, Activation Mutant, Phosphomimicking Mutant, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Temmerman, B. Simon, M. Wilmanns
Crystal Structure Of Death-Associated Protein Kinase 1 With A Crucial Phosphomimicking Mutation
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DEATH-ASSOCIATED PROTEIN KINASE 1
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Fragment: UNP RESIDUES 1-334
    Gene: DAPK1, DAPK
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DAP KINASE 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MG1Ligand/IonMAGNESIUM ION
3NH43Ligand/IonAMMONIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:42 , GLU A:64 , ASP A:161 , PHE A:162 , HOH A:526binding site for residue MG A 401
2AC2SOFTWAREGLU A:173binding site for residue NH4 A 402
3AC3SOFTWARETHR A:49 , ASN A:233binding site for residue NH4 A 403
4AC4SOFTWAREGLN A:38 , TYR A:39 , GLU A:94 , LEU A:95 , SER A:132 , HOH A:523binding site for residue GOL A 405
5AC5SOFTWAREHIS A:131 , LEU A:196 , GLU A:197 , MET A:200 , THR A:265 , ILE A:266 , GLN A:267binding site for residue GOL A 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TL0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4TL0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TL0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TL0)

(-) Exons   (0, 0)

(no "Exon" information available for 4TL0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:300
                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhheeeeeeeee...eeeeeeee.....eeeeeeee...........hhhhhhhhhhhhhhh.......eeeeee...eeeeeee.....hhhhhhhhh..eehhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.........eee......ee.................hhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh............hhhhhhhhhh....hhhhh.hhhhhh..........hhhhhhhhheehhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4tl0 A   2 TVFRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKDTQQALSRKAEAVNMEKFKKFAA 301
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TL0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TL0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TL0)

(-) Gene Ontology  (33, 33)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  4tl0
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  DAPK1_HUMAN | P53355
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DAPK1_HUMAN | P53355: 1ig1 1jkk 1jkl 1jks 1jkt 1p4f 1wvw 1wvx 1wvy 1yr5 2w4j 2w4k 2x0g 2xuu 2xzs 2y0a 2y4p 2y4v 2yak 3dfc 3dgk 3eh9 3eha 3f5g 3f5u 3gu4 3gu5 3gu6 3gu7 3gu8 3gub 3zxt 4b4l 4pf4 4txc 4uv0 4yo4 4ypd 5aut 5auu 5auv 5auw 5aux 5auy 5auz 5av0 5av1 5av2 5av3 5av4

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