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(-) Description

Title :  1.1A X-RAY STRUCTURE OF THE APO CATALYTIC DOMAIN OF DEATH-ASSOCIATED PROTEIN KINASE 1, AA 1-277
 
Authors :  K. Temmerman, B. Simon, M. Wilmanns
Date :  28 Apr 14  (Deposition) - 14 May 14  (Release) - 10 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.13
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Temmerman, B. Simon, M. Wilmanns
1. 1A X-Ray Structure Of The Apo Catalytic Domain Of Death-Associated Protein Kinase 1, Aa 1-277
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DEATH-ASSOCIATED PROTEIN KINASE 1
    ChainsA
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPNEA-VHISGST
    Expression System Taxid511693
    Expression System VariantROSETTA2
    Expression System Vector TypePLASMID
    GeneDAPK1, DAPK
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymDAP KINASE 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 13)

Asymmetric/Biological Unit (4, 13)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
2MG1Ligand/IonMAGNESIUM ION
3NA2Ligand/IonSODIUM ION
4SO44Ligand/IonSULFATE ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:86 , LYS A:249 , ARG A:253 , GOL A:309 , HOH A:488 , HOH A:553 , HOH A:880binding site for residue SO4 A 301
02AC2SOFTWARELYS A:222 , LEU A:226 , ARG A:254 , HOH A:801binding site for residue SO4 A 302
03AC3SOFTWAREGLY A:22 , GLN A:23 , HOH A:712 , HOH A:720 , HOH A:791 , HOH A:815 , HOH A:833 , HOH A:843binding site for residue SO4 A 303
04AC4SOFTWAREARG A:63 , HOH A:682 , HOH A:717 , HOH A:766binding site for residue SO4 A 304
05AC5SOFTWAREGLU A:32 , THR A:35 , LEU A:37 , TYR A:39 , HIS A:80 , SER A:132binding site for residue NA A 305
06AC6SOFTWAREALA A:40 , GLU A:94 , LEU A:95 , VAL A:96 , MET A:146 , ILE A:160 , HOH A:783 , HOH A:831 , HOH A:870binding site for residue GOL A 306
07AC7SOFTWAREPHE A:102 , PRO A:142 , GLU A:143 , GLU A:182 , PHE A:183 , ILE A:209 , HOH A:750 , HOH A:751 , HOH A:772 , HOH A:885binding site for residue GOL A 307
08AC8SOFTWARELYS A:42 , VAL A:56 , GLU A:64 , ASP A:161 , HOH A:681 , HOH A:718 , HOH A:720 , HOH A:833binding site for residue GOL A 308
09AC9SOFTWARETYR A:234 , GLU A:235 , PHE A:236 , ARG A:253 , SO4 A:301 , HOH A:407 , HOH A:553 , HOH A:834binding site for residue GOL A 309
10AD1SOFTWAREVAL A:26 , ASP A:88 , ASN A:243 , HOH A:467 , HOH A:518 , HOH A:547 , HOH A:868binding site for residue GOL A 310
11AD2SOFTWAREARG A:5 , TYR A:12 , GLU A:32 , SER A:34 , TYR A:128 , GLN A:271 , HOH A:403 , HOH A:404 , HOH A:411 , HOH A:451 , HOH A:512 , HOH A:672binding site for residue GOL A 311
12AD3SOFTWAREGLN A:72 , HIS A:73 , ASP A:169 , HOH A:497binding site for residue NA A 312
13AD4SOFTWARELYS A:42 , ASP A:161 , HOH A:870binding site for residue MG A 313

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PF4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PF4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PF4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PF4)

(-) Exons   (0, 0)

(no "Exon" information available for 4PF4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:278
                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhh.eeeeeeeee...eeeeeeee.....eeeeeeee...........hhhhhhhhhhhhhhh.......eeeeee...eeeeeee.....hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.........eee......ee............hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.....hhhhhh..hhhhhhhhhhhh........hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pf4 A   0 HMTVFRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKP 277
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269        

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PF4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PF4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PF4)

(-) Gene Ontology  (33, 33)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DAPK1_HUMAN | P533551ig1 1jkk 1jkl 1jks 1jkt 1p4f 1wvw 1wvx 1wvy 1yr5 2w4j 2w4k 2x0g 2xuu 2xzs 2y0a 2y4p 2y4v 2yak 3dfc 3dgk 3eh9 3eha 3f5g 3f5u 3gu4 3gu5 3gu6 3gu7 3gu8 3gub 3zxt 4b4l 4tl0 4txc 4uv0 4yo4 4ypd 5aut 5auu 5auv 5auw 5aux 5auy 5auz 5av0 5av1 5av2 5av3 5av4

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4PF4)