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(-) Description

Title :  ISPG IN COMPLEX WITH INTERMEDIATE I
 
Authors :  F. Quitterer, A. Frank, K. Wang, G. Rao, B. O'Dowd, J. Li, F. Guerra, S. Ab Azeim, A. Bacher, J. Eppinger, E. Oldfield, M. Groll
Date :  26 Jan 15  (Deposition) - 06 May 15  (Release) - 01 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Methylerythritol-Phosphate Pathway, Terpene Biosynthesis, Iron-Sulfur Enzymes, Reaction Mechanisms, Drug Development, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Quitterer, A. Frank, K. Wang, G. Rao, B. O'Dowd, J. Li, F. Guerra, S. Abdel-Azeim, A. Bacher, J. Eppinger, E. Oldfield, M. Groll
Atomic-Resolution Structures Of Discrete Stages On The Reaction Coordinate Of The [Fe4S4] Enzyme Ispg (Gcpe).
J. Mol. Biol. V. 427 2220 2015
PubMed-ID: 25868383  |  Reference-DOI: 10.1016/J.JMB.2015.04.002

(-) Compounds

Molecule 1 - 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE
    Chains: A
    EC Number: 1.17.7.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: ISPG, TTHA0305
    Organism Scientific: THERMUS THERMOPHILUS HB8
    Organism Taxid: 300852
    Strain: HB8 / ATCC 27634 / DSM 579
    Synonym: 1-HYDROXY-2-METHYL-2-(E)-BUTENYL 4-DIPHOSPHATE SYNTHASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric Unit (4, 5)
No.NameCountTypeFull Name
143Q1Ligand/Ion(3S)-1,3-DIHYDROXY-4-{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-2-METHYLBUT-2-YLIUM, CARBOKATIONINTERMEDIATE
2GOL2Ligand/IonGLYCEROL
3KCX1Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
4SF41Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 1 (4, 10)
No.NameCountTypeFull Name
143Q2Ligand/Ion(3S)-1,3-DIHYDROXY-4-{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-2-METHYLBUT-2-YLIUM, CARBOKATIONINTERMEDIATE
2GOL4Ligand/IonGLYCEROL
3KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
4SF42Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:56 , ASP A:87 , HIS A:89 , ARG A:110 , ARG A:141 , ASN A:145 , LYS A:204 , THR A:231 , GLU A:232 , ARG A:260 , SER A:262 , ASN A:346 , SF4 A:902BINDING SITE FOR RESIDUE 43Q A 901
2AC2SOFTWARECYS A:297 , CYS A:300 , THR A:303 , CYS A:343 , 43Q A:901BINDING SITE FOR RESIDUE SF4 A 902
3AC3SOFTWAREMET A:158 , ASP A:159 , THR A:379 , LEU A:381 , GLU A:389 , ARG A:392 , HOH A:1102BINDING SITE FOR RESIDUE GOL A 903
4AC4SOFTWAREGLU A:276 , GLN A:279 , GLU A:280 , GLN A:283 , ALA A:291 , HOH A:1177BINDING SITE FOR RESIDUE GOL A 904

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4S3A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4S3A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4S3A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4S3A)

(-) Exons   (0, 0)

(no "Exon" information available for 4S3A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:402
                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eee..eee......eeeee......hhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhhh.eeee........hhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh..hhh.eeeeee..hhhhhhhhhhhhhhhh....ee.....eehhhhhhhhhhhhhhhhhh....ee...ee.......hhhhhhhhhhhhhh.......eeee.........hhhhhhhhhhhhhhhhhhhhhhhhh.hhhh.eeeee....hhhhhhhhh.eeee.........eeeee..eeeeee...hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4s3a A   3 GMRRPTPTVYVGRVPIGGAHPIAVQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGAEVPLVGDFHFNGHLLLRKYPKMAEALDkFRINPGTLGRGRHKDEHFAEMIRIAMDLGKPVRIGANWGSLDPALLTELMDRNARRPEPKSAHEVVLEALVESAVRAYEAALEMGLGEDKLVLSAKVSKARDLVWVYRELARRTQAPLHLGLTEAGMGVKGIVASAAALAPLLLEGIGDTIRVSLTPAPGEPRTKEVEVAQEILQALGLRAFAPEVTSCPGCGRTTSTFFQELAEEVSRRLKERLPEWRARYPGVEELKVAVMGCVVNGPGESKHAHIGISLPGAGEEPKAPVYADGKLLTILKGEGIAEEFLRLVEDYVKTRFAP 404
                                    12        22        32        42        52        62        72        82        92       102     | 112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402  
                                                                                                                                   108-KCX
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4S3A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4S3A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4S3A)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)

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  4s3a
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  1.17.7.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ISPG_THET8 | Q5SLI8: 4s38 4s39 4s3b 4s3c 4s3d 4s3e 4s3f

(-) Related Entries Specified in the PDB File

2y0f STRUCTURE OF GCPE (ISPG) FROM THERMUS THERMOPHILUS HB27
3noy CRYSTAL STRUCTURE OF ISPG (GCPE)
4g9p STRUCTURE OF THE GCPE-MECPP (ISPG) COMPLEX FROM THERMUS THERMOPHILUS
4s38
4s39
4s3b
4s3c
4s3d
4s3e
4s3f