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(-) Description

Title :  STRUCTURE OF THE GCPE-MECPP (ISPG) COMPLEX FROM THERMUS THERMOPHILUS
 
Authors :  I. Rekittke, H. Jomaa, U. Ermler
Date :  24 Jul 12  (Deposition) - 26 Sep 12  (Release) - 17 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Oxidoreductase, Isoprenoid Biosynthesis, Non Mevalonate Pathway, Iron-Sulphur-Cluster, Tim-Barrel, Mecpp (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Rekittke, H. Jomaa, U. Ermler
Structure Of The Gcpe (Ispg)-Mecpp Complex From Thermus Thermophilus.
Febs Lett. V. 586 3452 2012
PubMed-ID: 22967895  |  Reference-DOI: 10.1016/J.FEBSLET.2012.07.070

(-) Compounds

Molecule 1 - 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE
    Chains: A
    EC Number: 1.17.7.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQETTGCPE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GCPE, ISPG, TT_C1677
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 262724
    Strain: HB27 / ATCC BAA-163 / DSM 7039
    Synonym: 1-HYDROXY-2-METHYL-2-(E)-BUTENYL 4-DIPHOSPHATE SYNTHASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 7)

Asymmetric Unit (5, 7)
No.NameCountTypeFull Name
1CDI1Ligand/Ion2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE
2CL2Ligand/IonCHLORIDE ION
3K1Ligand/IonPOTASSIUM ION
4MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5SF41Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
1CDI2Ligand/Ion2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE
2CL-1Ligand/IonCHLORIDE ION
3K-1Ligand/IonPOTASSIUM ION
4MES4Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5SF42Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:297 , GLY A:299 , CYS A:300 , CYS A:343 , CDI A:502BINDING SITE FOR RESIDUE SF4 A 501
2AC2SOFTWAREARG A:56 , ASP A:87 , HIS A:89 , ARG A:110 , ARG A:141 , ASN A:145 , LYS A:204 , THR A:231 , GLU A:232 , ARG A:260 , SER A:262 , ASN A:346 , SF4 A:501BINDING SITE FOR RESIDUE CDI A 502
3AC3SOFTWAREGLU A:280 , GLN A:283 , ALA A:291 , PRO A:292 , GLU A:293 , VAL A:294 , SER A:316 , HOH A:613 , HOH A:630 , HOH A:761BINDING SITE FOR RESIDUE MES A 503
4AC4SOFTWAREASN A:31 , GLN A:309 , K A:505 , HOH A:717BINDING SITE FOR RESIDUE CL A 504
5AC5SOFTWARESER A:266 , PRO A:267 , GLU A:269 , GLN A:309 , CL A:504BINDING SITE FOR RESIDUE K A 505
6AC6SOFTWARELYS A:122 , ASP A:123 , PHE A:126 , ALA A:185BINDING SITE FOR RESIDUE MES A 506
7AC7SOFTWAREGLN A:27 , SER A:28 , ARG A:56 , ARG A:260BINDING SITE FOR RESIDUE CL A 507

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G9P)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Glu A:2 -Gly A:3
2Gly A:3 -Met A:4
3Lys A:405 -Ala A:406

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G9P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G9P)

(-) Exons   (0, 0)

(no "Exon" information available for 4G9P)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:405
                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eee..eee......eeeee......hhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhhh.eeee.......hhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeee..hhhhhhhhhhhhhhhh....ee......hhhhhhhhhhhhhhhhhhh....ee............hhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhh.eeeee....hhhhhhhhh.eeee........eeeeee..eeeeeee..hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g9p A   2 EGMRRPTPTVYVGRVPIGGAHPIAVQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGVEVPLVGDFHFNGHLLLRKYPKMAEALDKFRINPGTLGRGRHKDEHFAEMIRIAMDLGKPVRIGANWGSLDPALLTELMDRNASRPEPKSAHEVVLEALVESAVRAYEAALEMGLGEDKLVLSAKVSKARDLVWVYRELARRTQAPLHLGLTEAGMGVKGIVASAAALAPLLLEGIGDTIRVSLTPSPKEPRTKEVEVAQEILQALGLRAFAPEVTSCPGCGRTTSTFFQELAEEVSRRLKERLPEWRARYPGVEELKVAVMGCVVNGPGESKHAHIGISLPGAGEEPKAPVYADGKLLTILKGEGIAEEFLRLVEDYVKTRFAPKA 406
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G9P)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G9P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G9P)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        ISPG_THET2 | Q72H18: 2y0f

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