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(-) Description

Title :  ISPG IN COMPLEX MECPP
 
Authors :  F. Quitterer, A. Frank, K. Wang, R. Guodong, B. O'Dowd, J. Li, F. Guerra, Azeim, A. Bacher, J. Eppinger, E. Oldfield, M. Groll
Date :  26 Jan 15  (Deposition) - 29 Apr 15  (Release) - 01 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Methylerythritol-Phosphate Pathway, Terpene Biosynthesis, Iron-Sulfur Enzymes, Reaction Mechanisms, Drug Development, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Quitterer, A. Frank, K. Wang, G. Rao, B. O'Dowd, J. Li, F. Guerra, S. Abdel-Azeim, A. Bacher, J. Eppinger, E. Oldfield, M. Groll
Atomic-Resolution Structures Of Discrete Stages On The Reaction Coordinate Of The [Fe4S4] Enzyme Ispg (Gcpe).
J. Mol. Biol. V. 427 2220 2015
PubMed-ID: 25868383  |  Reference-DOI: 10.1016/J.JMB.2015.04.002

(-) Compounds

Molecule 1 - 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE
    Atcc: 27634
    Chains: A
    EC Number: 1.17.7.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: ISPG, TTHA0305
    Organism Scientific: THERMUS THERMOPHILUS HB8
    Organism Taxid: 300852
    Strain: HB8/DSM 579
    Synonym: 1-HYDROXY-2-METHYL-2-(E)-BUTENYL 4-DIPHOSPHATE SYNTHASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 10)

Asymmetric Unit (7, 10)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2CDI1Ligand/Ion2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE
3GOL3Ligand/IonGLYCEROL
4KCX1Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
5MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
7SF41Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 1 (7, 20)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2CDI2Ligand/Ion2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE
3GOL6Ligand/IonGLYCEROL
4KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
5MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
7SF42Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:56 , ASP A:87 , HIS A:89 , ARG A:110 , ARG A:141 , ASN A:145 , LYS A:204 , THR A:231 , GLU A:232 , ARG A:260 , SER A:262 , ASN A:346 , SF4 A:901BINDING SITE FOR RESIDUE CDI A 900
2AC2SOFTWARECYS A:297 , GLY A:299 , CYS A:300 , THR A:303 , GLY A:342 , CYS A:343 , CDI A:900BINDING SITE FOR RESIDUE SF4 A 901
3AC3SOFTWARELYS A:238 , GLU A:280 , GLN A:283 , ALA A:291 , PRO A:292 , GLU A:293 , VAL A:294 , SER A:316 , HOH A:1096 , HOH A:1102BINDING SITE FOR RESIDUE MES A 902
4AC4SOFTWAREMET A:158 , ASP A:159 , LEU A:381 , ARG A:392 , HOH A:1085 , HOH A:1225BINDING SITE FOR RESIDUE GOL A 903
5AC5SOFTWAREASN A:31 , PRO A:265 , ALA A:266 , GLY A:268 , GLU A:269 , ARG A:271 , GLN A:309 , HOH A:1089BINDING SITE FOR RESIDUE GOL A 904
6AC6SOFTWAREALA A:50 , GLN A:279 , ARG A:327 , HOH A:1289BINDING SITE FOR RESIDUE GOL A 905
7AC7SOFTWARELYS A:352 , TYR A:372 , LYS A:376 , LEU A:377 , HOH A:1081 , HOH A:1298BINDING SITE FOR RESIDUE PEG A 906
8AC8SOFTWAREARG A:131 , ARG A:329 , LYS A:399 , HOH A:1286 , HOH A:1337 , HOH A:1357BINDING SITE FOR RESIDUE PEG A 907
9AC9SOFTWARETYR A:186 , LEU A:190 , GLU A:191 , GLU A:196 , GLN A:223 , HOH A:1317 , HOH A:1374BINDING SITE FOR RESIDUE 1PE A 908

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4S38)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4S38)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4S38)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4S38)

(-) Exons   (0, 0)

(no "Exon" information available for 4S38)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:401
                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee..eee......eeeee......hhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhhh.eeee........hhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeee..hhhhhhhhhhhhhhhh....ee.....eehhhhhhhhhhhhhhhhhh....ee...ee.......hhhhhhhhhhhhhh.......eeee.........hhhhhhhhhhhhhhhhhhhhhhhhh.hhhh.eeeee....hhhhhhhhh.eeee.........eeeee..eeeeee...hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4s38 A   4 MRRPTPTVYVGRVPIGGAHPIAVQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGAEVPLVGDFHFNGHLLLRKYPKMAEALDkFRINPGTLGRGRHKDEHFAEMIRIAMDLGKPVRIGANWGSLDPALLTELMDRNARRPEPKSAHEVVLEALVESAVRAYEAALEMGLGEDKLVLSAKVSKARDLVWVYRELARRTQAPLHLGLTEAGMGVKGIVASAAALAPLLLEGIGDTIRVSLTPAPGEPRTKEVEVAQEILQALGLRAFAPEVTSCPGCGRTTSTFFQELAEEVSRRLKERLPEWRARYPGVEELKVAVMGCVVNGPGESKHAHIGISLPGAGEEPKAPVYADGKLLTILKGEGIAEEFLRLVEDYVKTRFAP 404
                                    13        23        33        43        53        63        73        83        93       103    |  113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403 
                                                                                                                                  108-KCX
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4S38)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4S38)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4S38)

(-) Gene Ontology  (11, 11)

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  4s38
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  ISPG_THET8 | Q5SLI8
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  1.17.7.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ISPG_THET8 | Q5SLI8: 4s39 4s3a 4s3b 4s3c 4s3d 4s3e 4s3f

(-) Related Entries Specified in the PDB File

2y0f STRUCTURE OF GCPE (ISPG) FROM THERMUS THERMOPHILUS HB27
3noy CRYSTAL STRUCTURE OF ISPG (GCPE)
4g9p STRUCTURE OF THE GCPE-MECPP (ISPG) COMPLEX FROM THERMUS THERMOPHILU
4s39
4s3a
4s3b
4s3c
4s3d
4s3e
4s3f