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(-) Description

Title :  CRYSTAL STRUCTURE OF AN UNCOATING INTERMEDIATE OF A EV71 RECOMBINANT VIRUS
 
Authors :  R. Chen, K. Lyu
Date :  07 Nov 14  (Deposition) - 17 Dec 14  (Release) - 15 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.81
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O  (12x)
Keywords :  Eight-Stranded Beta Barrel, Replicate In Cytoplasm, Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Lyu, G. C. Wang, Y. L. He, J. F. Han, Q. Ye, C. F. Qin, R. Chen
Crystal Structures Of Enterovirus 71 (Ev71) Recombinant Virus Particles Provide Insights Into Vaccine Design.
J. Biol. Chem. V. 290 3198 2015
PubMed-ID: 25492868  |  Reference-DOI: 10.1074/JBC.M114.624536

(-) Compounds

Molecule 1 - CAPSID PROTEIN VP3
    Chains: E, N, B, H, K
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: RD CELLS
    Expression System Taxid: 9606
    Mutation: YES
    Organism Scientific: ENTEROVIRUS A71
    Organism Taxid: 39054
 
Molecule 2 - CAPSID PROTEIN VP0
    Chains: F, O, C, I, L
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: RD CELLS
    Expression System Taxid: 9606
    Organism Scientific: ENTEROVIRUS A71
    Organism Taxid: 39054
 
Molecule 3 - CAPSID PROTEIN VP1
    Chains: D, M, A, G, J
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: RD CELLS
    Expression System Taxid: 9606
    Organism Scientific: ENTEROVIRUS A71
    Organism Taxid: 39054

 Structural Features

(-) Chains, Units

  123456789101112131415
Asymmetric Unit : ABCDEFGHIJKLMNO
Biological Unit 1 (12x): ABCDEFGHIJKLMNO

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4RS5)

(-) Sites  (0, 0)

(no "Site" information available for 4RS5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RS5)

(-) Cis Peptide Bonds  (35, 35)

Asymmetric Unit
No.Residues
1Thr E:60 -Asn E:61
2Gln E:76 -Ala E:77
3Ser E:93 -Gly E:94
4Phe F:82 -Pro F:83
5Thr D:226 -Phe D:227
6Thr D:253 -Val D:254
7Gly D:255 -Thr D:256
8Thr M:226 -Phe M:227
9Thr M:253 -Val M:254
10Gly M:255 -Thr M:256
11Thr A:226 -Phe A:227
12Thr A:253 -Val A:254
13Gly A:255 -Thr A:256
14Thr G:226 -Phe G:227
15Thr G:253 -Val G:254
16Gly G:255 -Thr G:256
17Thr J:226 -Phe J:227
18Thr J:253 -Val J:254
19Gly J:255 -Thr J:256
20Thr N:60 -Asn N:61
21Gln N:76 -Ala N:77
22Ser N:93 -Gly N:94
23Thr B:60 -Asn B:61
24Gln B:76 -Ala B:77
25Ser B:93 -Gly B:94
26Thr H:60 -Asn H:61
27Gln H:76 -Ala H:77
28Ser H:93 -Gly H:94
29Thr K:60 -Asn K:61
30Gln K:76 -Ala K:77
31Ser K:93 -Gly K:94
32Phe O:82 -Pro O:83
33Phe C:82 -Pro C:83
34Phe I:82 -Pro I:83
35Phe L:82 -Pro L:83

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RS5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RS5)

(-) Exons   (0, 0)

(no "Exon" information available for 4RS5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhh....eeeeeeee.......eeee.......hhhhhhh...eeeeeeeeeeeee.........eeeeeee...........hhhhh.....eeeee.....eeeee........ee......................hhhhh..eeee...........eeeeeeeeeeeeee..................................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs5 A  73 HSTAETTLDSFFSRAGLVGEIDLPLEPNGYANWDIDITGYAQMRRKVELFTYMRFDAEFTFVACTPTGEVVPQLLQYMFVPPGAPKPDSRESLAWQTATNPSVFVKLSDPPAQVSVPFMSPASAYQWFYDGYPTFGEHKQEKDLEYGACPNNMMGTFSVRTVGTSKSKYPLVVRIYMRMKHVRAWIPRPMRNQNYLFKANPNYAGNSIKPTGASRTAITTL 313
                                    82        92     ||122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312 
                                                    98|                                                                                                                                                                                                  
                                                    119                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......ee............................hhhhhh..ee..........hhhhhh.eeeee.......eeeee.......hhhhhhhhhhhhh....eeeeeeeeeee........eeeeeee........hhhhhhhh.eeeee.....eeeeeeeeee....eeeee.............eeeeeeeeee....ee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs5 B   1 GFPTELKPGTNQFLTTDDGVSAPILPNFHPTPCIHIPGEVRNLLELCQVETILEVNNVPTNATSLMERLRFPVSAQAGKGELCAVFRADPGRSGPWQSTLLGQLCGYYTQWSGSLEVTFMFTGSFMATGKMLIAYTPPGGPLPKDRATAMLGTHVIWDFGLQSSVTLVIPWISNTTGLVSIWYQTNYVVPIGAPNTAYIIALAAAQKNFTMQLCKDASDILQT 238
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   ||  195       205       215       225       235   
                                                                                                                                                                                                       174|                                                
                                                                                                                                                                                                        190                                                


Chain C from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee....ee.........ee.......................ee............ee...hhhhhh.hhhhhhhhh...eeeeeeeeeee.........eeeeee...................hhhhhh.....ee..hhhhh....hhhhhhhh.eeee......eeeeee.................eeeeee...............eeeee.eeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs5 C  11 DRVAQLTIGNSTITTQEAANIIVGYGEWPSYCSDSDATRPDVSVNRFYTLDTKLWEKSSKGWYWKFPDVLTETGVFGQNAQFHYLYRSGFCIHVQCNASKFHQGALLVAVLPEYVIGTVAGGTGTEDSHPPYKQTQPGADGFELQHPYVLDAGIPISQLTVCPHQWINLRTNNCATIIVPYINALPFDSALNHCNFGLLVVPISPLDYDQGATPVIPITITLAPMCSEFAGLRQAV 252
                                    20        30        40      ||56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246      
                                                               47|                                                                                                                                                                                                      
                                                                54                                                                                                                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh...eeeeeeee.......eeee.......hhhhhhh...eeeeeeeeeeeee.........eeeeeee...........hhhhh.....eeeee......eeee........ee......................hhhhh..eeeee..........eeeeeeeeeeeeee..................................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs5 D  73 HSTAETTLDSFFSRAGLVGEIDLPLEPNGYANWDIDITGYAQMRRKVELFTYMRFDAEFTFVACTPTGEVVPQLLQYMFVPPGAPKPDSRESLAWQTATNPSVFVKLSDPPAQVSVPFMSPASAYQWFYDGYPTFGEHKQEKDLEYGACPNNMMGTFSVRTVGTSKSKYPLVVRIYMRMKHVRAWIPRPMRNQNYLFKANPNYAGNSIKPTGASRTAITTL 313
                                    82        92     ||122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312 
                                                    98|                                                                                                                                                                                                  
                                                    119                                                                                                                                                                                                  


Chain E from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......ee............................hhhhhh..ee...........hhhhhh............eeeeee......hhhhhhhhhhhhh....eeeeeeeeeee........eeeeeee........hhhhhhhh.eeeee.....eeeeeeeeee....eeeee................eeeeeee....ee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs5 E   1 GFPTELKPGTNQFLTTDDGVSAPILPNFHPTPCIHIPGEVRNLLELCQVETILEVNNVPTNATSLMERLRFPVSAQAGKGELCAVFRADPGRSGPWQSTLLGQLCGYYTQWSGSLEVTFMFTGSFMATGKMLIAYTPPGGPLPKDRATAMLGTHVIWDFGLQSSVTLVIPWISNTTGLVSIWYQTNYVVPIGAPNTAYIIALAAAQKNFTMQLCKDASDILQT 238
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   ||  195       205       215       225       235   
                                                                                                                                                                                                       174|                                                
                                                                                                                                                                                                        190                                                


Chain F from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eee.........ee.......................ee............ee...hhhhhh.hhhhhhhhh...eeeeeeeeeee.........eeeeee...................hhhhhh.........hhhhh....hhhhhhhh.eeee......eeeeee.................eeeeee...............eeeee.eeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs5 F  11 DRVAQLTIGNSTITTQEAANIIVGYGEWPSYCSDSDATRPDVSVNRFYTLDTKLWEKSSKGWYWKFPDVLTETGVFGQNAQFHYLYRSGFCIHVQCNASKFHQGALLVAVLPEYVIGTVAGGTGTEDSHPPYKQTQPGADGFELQHPYVLDAGIPISQLTVCPHQWINLRTNNCATIIVPYINALPFDSALNHCNFGLLVVPISPLDYDQGATPVIPITITLAPMCSEFAGLRQAV 252
                                    20        30        40      ||56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246      
                                                               47|                                                                                                                                                                                                      
                                                                54                                                                                                                                                                                                      


Chain G from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh...eeeeeeee.......eeee.......hhhhhhh...eeeeeeeeeeeee.........eeeeeee...........hhhhh.....eeeee.....eeeee........ee......................hhhhh..eeeee..........eeeeeeeeeeeeee..................................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs5 G  73 HSTAETTLDSFFSRAGLVGEIDLPLEPNGYANWDIDITGYAQMRRKVELFTYMRFDAEFTFVACTPTGEVVPQLLQYMFVPPGAPKPDSRESLAWQTATNPSVFVKLSDPPAQVSVPFMSPASAYQWFYDGYPTFGEHKQEKDLEYGACPNNMMGTFSVRTVGTSKSKYPLVVRIYMRMKHVRAWIPRPMRNQNYLFKANPNYAGNSIKPTGASRTAITTL 313
                                    82        92     ||122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312 
                                                    98|                                                                                                                                                                                                  
                                                    119                                                                                                                                                                                                  


Chain H from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......ee............................hhhhhh..ee...........hhhhh.eeee........eeeeee......hhhhhhhhhhhhh....eeeeeeeeeee........eeeeeee........hhhhhhhh.eeeee.....eeeeeeeeee....eeeee..............eeeeeeeee....ee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs5 H   1 GFPTELKPGTNQFLTTDDGVSAPILPNFHPTPCIHIPGEVRNLLELCQVETILEVNNVPTNATSLMERLRFPVSAQAGKGELCAVFRADPGRSGPWQSTLLGQLCGYYTQWSGSLEVTFMFTGSFMATGKMLIAYTPPGGPLPKDRATAMLGTHVIWDFGLQSSVTLVIPWISNTTGLVSIWYQTNYVVPIGAPNTAYIIALAAAQKNFTMQLCKDASDILQT 238
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   ||  195       205       215       225       235   
                                                                                                                                                                                                       174|                                                
                                                                                                                                                                                                        190                                                


Chain I from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eee.........ee.......................ee............eeee.hhhhhh.hhhhhhhhh......eeeeeeee.........eeeeee...................hhhhhh.........hhhhh....hhhhhhhh.eeee.......eeeee.................eeeeee...............eeeee.ee........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs5 I  11 DRVAQLTIGNSTITTQEAANIIVGYGEWPSYCSDSDATRPDVSVNRFYTLDTKLWEKSSKGWYWKFPDVLTETGVFGQNAQFHYLYRSGFCIHVQCNASKFHQGALLVAVLPEYVIGTVAGGTGTEDSHPPYKQTQPGADGFELQHPYVLDAGIPISQLTVCPHQWINLRTNNCATIIVPYINALPFDSALNHCNFGLLVVPISPLDYDQGATPVIPITITLAPMCSEFAGLRQAV 252
                                    20        30        40      ||56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246      
                                                               47|                                                                                                                                                                                                      
                                                                54                                                                                                                                                                                                      


Chain J from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh...eeeeeeee.......eeee.......hhhhhhh...eeeeeeeeeeeee.........eeeeeee...........hhhhh.....eeeee.....eeeee........ee......................hhhhh..eeee...........eeeeeeeeeeeeee...................hhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs5 J  73 HSTAETTLDSFFSRAGLVGEIDLPLEPNGYANWDIDITGYAQMRRKVELFTYMRFDAEFTFVACTPTGEVVPQLLQYMFVPPGAPKPDSRESLAWQTATNPSVFVKLSDPPAQVSVPFMSPASAYQWFYDGYPTFGEHKQEKDLEYGACPNNMMGTFSVRTVGTSKSKYPLVVRIYMRMKHVRAWIPRPMRNQNYLFKANPNYAGNSIKPTGASRTAITTL 313
                                    82        92     ||122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312 
                                                    98|                                                                                                                                                                                                  
                                                    119                                                                                                                                                                                                  


Chain K from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......ee............................hhhhhh..ee..........hhhhhh.eeeee.......eeeeee......hhhhhhhhhhhhhhh..ee..eeeeeee........eeeeeee........hhhhhhhh.eeeee.....eeeeee........eeeee.............eeeeeeeeee....ee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs5 K   1 GFPTELKPGTNQFLTTDDGVSAPILPNFHPTPCIHIPGEVRNLLELCQVETILEVNNVPTNATSLMERLRFPVSAQAGKGELCAVFRADPGRSGPWQSTLLGQLCGYYTQWSGSLEVTFMFTGSFMATGKMLIAYTPPGGPLPKDRATAMLGTHVIWDFGLQSSVTLVIPWISNTTGLVSIWYQTNYVVPIGAPNTAYIIALAAAQKNFTMQLCKDASDILQT 238
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   ||  195       205       215       225       235   
                                                                                                                                                                                                       174|                                                
                                                                                                                                                                                                        190                                                


Chain L from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eee.........ee.......................ee............ee...hhhhhh.hhhhhhhhh....eeeeeeeeee.........eeeeee...................hhhhhh.........hhhhh....hhhhhhhh.eeee......eeeeee.................eeeeee...............eeeee.eeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs5 L  11 DRVAQLTIGNSTITTQEAANIIVGYGEWPSYCSDSDATRPDVSVNRFYTLDTKLWEKSSKGWYWKFPDVLTETGVFGQNAQFHYLYRSGFCIHVQCNASKFHQGALLVAVLPEYVIGTVAGGTGTEDSHPPYKQTQPGADGFELQHPYVLDAGIPISQLTVCPHQWINLRTNNCATIIVPYINALPFDSALNHCNFGLLVVPISPLDYDQGATPVIPITITLAPMCSEFAGLRQAV 252
                                    20        30        40      ||56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246      
                                                               47|                                                                                                                                                                                                      
                                                                54                                                                                                                                                                                                      


Chain M from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh...eeeeeeee.......eeee.......hhhhhhh...eeeeeeeeeeeee.........eeeeeee...........hhhhh.....eeeee.....eeeee........ee......................hhhhh..eeeee..........eeeeeeeeeeeeee..................................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs5 M  73 HSTAETTLDSFFSRAGLVGEIDLPLEPNGYANWDIDITGYAQMRRKVELFTYMRFDAEFTFVACTPTGEVVPQLLQYMFVPPGAPKPDSRESLAWQTATNPSVFVKLSDPPAQVSVPFMSPASAYQWFYDGYPTFGEHKQEKDLEYGACPNNMMGTFSVRTVGTSKSKYPLVVRIYMRMKHVRAWIPRPMRNQNYLFKANPNYAGNSIKPTGASRTAITTL 313
                                    82        92     ||122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312 
                                                    98|                                                                                                                                                                                                  
                                                    119                                                                                                                                                                                                  


Chain N from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......ee............................hhhhhh..ee...........hhhhh.eeeee.......eeeeee......hhhhhhhhhhhhh....eeeeeeeeeee........eeeeeee........hhhhhhh.eeeeee.....eeeeeeeeee....eeeee.............eeeeeeeeee....ee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs5 N   1 GFPTELKPGTNQFLTTDDGVSAPILPNFHPTPCIHIPGEVRNLLELCQVETILEVNNVPTNATSLMERLRFPVSAQAGKGELCAVFRADPGRSGPWQSTLLGQLCGYYTQWSGSLEVTFMFTGSFMATGKMLIAYTPPGGPLPKDRATAMLGTHVIWDFGLQSSVTLVIPWISNTTGLVSIWYQTNYVVPIGAPNTAYIIALAAAQKNFTMQLCKDASDILQT 238
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   ||  195       205       215       225       235   
                                                                                                                                                                                                       174|                                                
                                                                                                                                                                                                        190                                                


Chain O from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eee.........ee.......................ee............eeee.hhhhhh.hhhhhhhhh...eeeeeeeeee..........eeeeee...................hhhhhh.........hhhhh....hhhhhhhh.eeee......eeeeee.................eeeeee................eeee.eeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rs5 O  11 DRVAQLTIGNSTITTQEAANIIVGYGEWPSYCSDSDATRPDVSVNRFYTLDTKLWEKSSKGWYWKFPDVLTETGVFGQNAQFHYLYRSGFCIHVQCNASKFHQGALLVAVLPEYVIGTVAGGTGTEDSHPPYKQTQPGADGFELQHPYVLDAGIPISQLTVCPHQWINLRTNNCATIIVPYINALPFDSALNHCNFGLLVVPISPLDYDQGATPVIPITITLAPMCSEFAGLRQAV 252
                                    20        30        40      ||56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246      
                                                               47|                                                                                                                                                                                                      
                                                                54
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RS5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RS5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RS5)

(-) Gene Ontology  (36, 36)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
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  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 4rs5)
 
  Sites
(no "Sites" information available for 4rs5)
 
  Cis Peptide Bonds
    Gln B:76 - Ala B:77   [ RasMol ]  
    Gln E:76 - Ala E:77   [ RasMol ]  
    Gln H:76 - Ala H:77   [ RasMol ]  
    Gln K:76 - Ala K:77   [ RasMol ]  
    Gln N:76 - Ala N:77   [ RasMol ]  
    Gly A:255 - Thr A:256   [ RasMol ]  
    Gly D:255 - Thr D:256   [ RasMol ]  
    Gly G:255 - Thr G:256   [ RasMol ]  
    Gly J:255 - Thr J:256   [ RasMol ]  
    Gly M:255 - Thr M:256   [ RasMol ]  
    Phe C:82 - Pro C:83   [ RasMol ]  
    Phe F:82 - Pro F:83   [ RasMol ]  
    Phe I:82 - Pro I:83   [ RasMol ]  
    Phe L:82 - Pro L:83   [ RasMol ]  
    Phe O:82 - Pro O:83   [ RasMol ]  
    Ser B:93 - Gly B:94   [ RasMol ]  
    Ser E:93 - Gly E:94   [ RasMol ]  
    Ser H:93 - Gly H:94   [ RasMol ]  
    Ser K:93 - Gly K:94   [ RasMol ]  
    Ser N:93 - Gly N:94   [ RasMol ]  
    Thr A:226 - Phe A:227   [ RasMol ]  
    Thr A:253 - Val A:254   [ RasMol ]  
    Thr B:60 - Asn B:61   [ RasMol ]  
    Thr D:226 - Phe D:227   [ RasMol ]  
    Thr D:253 - Val D:254   [ RasMol ]  
    Thr E:60 - Asn E:61   [ RasMol ]  
    Thr G:226 - Phe G:227   [ RasMol ]  
    Thr G:253 - Val G:254   [ RasMol ]  
    Thr H:60 - Asn H:61   [ RasMol ]  
    Thr J:226 - Phe J:227   [ RasMol ]  
    Thr J:253 - Val J:254   [ RasMol ]  
    Thr K:60 - Asn K:61   [ RasMol ]  
    Thr M:226 - Phe M:227   [ RasMol ]  
    Thr M:253 - Val M:254   [ RasMol ]  
    Thr N:60 - Asn N:61   [ RasMol ]  
 
Biological Unit
  Complete Structure
    Biological Unit 1  [ Jena3D ]

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  4rs5
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  F6KTB0_9ENTO | F6KTB0
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  F6KTB0_9ENTO | F6KTB0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        F6KTB0_9ENTO | F6KTB0: 3sjk 4rqp 4rr3 4yvs 4yvw

(-) Related Entries Specified in the PDB File

4n43 CRYSTAL STRUCTURE OF AN UNCOATING INTERMEDIATE OF A CLINICAL C4 STRAIN EV71
4n53 CRYSTAL STRUCTURE OF A CLINICAL C4 STRAIN EV71 VIRION
4rqp CRYSTAL STRUCTURE OF THE EMPTY PARTICLE OF A CLINICAL C4 STRAIN EV71
4rr3 CRYSTAL STRUCTURE OF THE EMPTY PARTICLE OF A EV71 RECOMBINANT VIRUS