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(-) Description

Title :  CRYSTAL STRUCTURE OF T. FUSCA CAS3-ATP
 
Authors :  A. Ke, Y. Huo, K. H. Nam
Date :  30 Jun 14  (Deposition) - 20 Aug 14  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.34
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  C,D  (1x)
Biol. Unit 2:  A,B  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  A,B,C,D  (1x)
Biol. Unit 6:  E,F,G,H  (1x)
Keywords :  Crispr, Cas3, Hydrolase, Helicase, Hydrolase-Dna Complex, Helicase- Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Huo, K. H. Nam, F. Ding, H. Lee, L. Wu, Y. Xiao, M. D. Farchione, S. Zhou K. Rajashankar, I. Kurinov, R. Zhang, A. Ke
Structures Of Crispr Cas3 Offer Mechanistic Insights Into Cascade-Activated Dna Unwinding And Degradation.
Nat. Struct. Mol. Biol. V. 21 771 2014
PubMed-ID: 25132177  |  Reference-DOI: 10.1038/NSMB.2875

(-) Compounds

Molecule 1 - CRISPR-ASSOCIATED HELICASE, CAS3 FAMILY
    Chains: A, C, E, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B
    Expression System Strain: BL21(DE3)STAR
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TFU_1593
    Organism Scientific: THERMOBIFIDA FUSCA
    Organism Taxid: 269800
    Strain: YX
 
Molecule 2 - DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
    Chains: B, D, F, H
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x):   CD    
Biological Unit 2 (1x): AB      
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH
Biological Unit 5 (1x): ABCD    
Biological Unit 6 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric Unit (2, 12)
No.NameCountTypeFull Name
1ATP4Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2FE8Ligand/IonFE (III) ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2FE-1Ligand/IonFE (III) ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2FE-1Ligand/IonFE (III) ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2FE-1Ligand/IonFE (III) ION
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2FE-1Ligand/IonFE (III) ION
Biological Unit 5 (1, 2)
No.NameCountTypeFull Name
1ATP2Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2FE-1Ligand/IonFE (III) ION
Biological Unit 6 (1, 2)
No.NameCountTypeFull Name
1ATP2Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2FE-1Ligand/IonFE (III) ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:84 , HIS A:115 , HIS A:149 , HIS A:150 , DA B:12BINDING SITE FOR RESIDUE FE A 1001
02AC2SOFTWAREHIS A:37 , HIS A:83 , ASP A:84 , ASP A:215 , DA B:12BINDING SITE FOR RESIDUE FE A 1002
03AC3SOFTWARELEU A:277 , LYS A:279 , PRO A:280 , ASN A:281 , GLN A:284 , MET A:307 , GLY A:308 , GLU A:309 , GLY A:310 , LYS A:311 , THR A:312 , GLU A:313 , ARG A:347 , ASP A:451BINDING SITE FOR RESIDUE ATP A 1003
04AC4SOFTWAREASP C:84 , HIS C:115 , HIS C:149 , HIS C:150 , FE C:1002 , DA D:12BINDING SITE FOR RESIDUE FE C 1001
05AC5SOFTWAREHIS C:37 , HIS C:83 , ASP C:84 , ASP C:215 , FE C:1001 , DA D:12BINDING SITE FOR RESIDUE FE C 1002
06AC6SOFTWARELEU C:277 , LYS C:279 , ASN C:281 , MET C:307 , GLY C:308 , GLU C:309 , GLY C:310 , LYS C:311 , THR C:312 , GLU C:313 , ARG C:347 , ASP C:451 , GLU C:452BINDING SITE FOR RESIDUE ATP C 1003
07AC7SOFTWAREASP E:84 , LYS E:87 , HIS E:115 , HIS E:149 , HIS E:150 , FE E:1002 , DA F:12BINDING SITE FOR RESIDUE FE E 1001
08AC8SOFTWAREHIS E:37 , HIS E:83 , ASP E:84 , ASP E:215 , FE E:1001 , DA F:12BINDING SITE FOR RESIDUE FE E 1002
09AC9SOFTWARELEU E:277 , LYS E:279 , ASN E:281 , GLN E:284 , GLY E:308 , GLY E:310 , LYS E:311 , THR E:312 , GLU E:313 , ARG E:347 , ASP E:451 , GLU E:452BINDING SITE FOR RESIDUE ATP E 1003
10BC1SOFTWAREASP G:84 , HIS G:115 , HIS G:149 , HIS G:150 , FE G:1002 , DA H:12BINDING SITE FOR RESIDUE FE G 1001
11BC2SOFTWAREHIS G:37 , HIS G:83 , ASP G:84 , LYS G:87 , ASP G:215 , FE G:1001 , DA H:12BINDING SITE FOR RESIDUE FE G 1002
12BC3SOFTWARELEU G:277 , LYS G:279 , ASN G:281 , PRO G:306 , MET G:307 , GLY G:308 , GLU G:309 , GLY G:310 , LYS G:311 , THR G:312 , GLU G:313 , ARG G:347 , ASP G:451 , GLU G:452BINDING SITE FOR RESIDUE ATP G 1003

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QQX)

(-) Cis Peptide Bonds  (15, 15)

Asymmetric Unit
No.Residues
1Tyr A:519 -Pro A:520
2Ala A:613 -Pro A:614
3Ile A:757 -Pro A:758
4Ala A:844 -Gly A:845
5Tyr C:519 -Pro C:520
6Leu C:541 -Pro C:542
7Leu C:609 -Gly C:610
8Ile C:757 -Pro C:758
9Ala C:844 -Gly C:845
10Tyr E:519 -Pro E:520
11Asp E:612 -Ala E:613
12Ile E:757 -Pro E:758
13Ala E:844 -Gly E:845
14Tyr G:519 -Pro G:520
15Ile G:757 -Pro G:758

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QQX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QQX)

(-) Exons   (0, 0)

(no "Exon" information available for 4QQX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:903
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee........eehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh...............hhhhhh...hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhh......hhhhhhhhhhh.......eeeeee.....hhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhhhhhh..........eeee.....................hhhhh..hhhhh.eeeeehhhhhh......hhhhhhhhhh.eeeee.hhhhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhh.................eeeeee.....eee.hhhh............eeeeeee.ee..ee.hhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhhhhhhhh......eeee.hhhh........eeeee..hhhhhhhhhhhh..................eeeeeee........hhhhhh..hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhh.....................eeeeeeeee.....ee..............hhhhh.hhhhhhhhhh..eeee..hhhhh.........hhhhhhhhhh.eeeeee.......eee..eee.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qqx A  14 PPLDLRFWAKERGLRGKTYPLVCHSLDAAAAALVLWNEYLSPGLRDTIASSMETDEEHAGHCIAFWAGLHDIGKLTREFQQQIAIDLSAYPGEELSGEQRSHAAATGKWLPFALPSLGYPNGGLVTGLVAQMLGGHHGTFHPHPSFQSRNPLAEFGFSSPHWEKQRHALLHAVFDATGRPTPPDMLDGPTASVVCGLVILADWLVSQEDFLLERLTSLPADGSASALRAHFETSLRRIPSLLDAAGLRPITVPPATFTESFPHLSKPNGLQASLAKHLPCLCTGPGLVLITAPMGEGKTEAAYHVADLLGKATGRPGRFLALPTMATADQMHTRLKEYARYRVENTDLPRSSTLALLHSMAWLNPDYAPAHRDPFAATDWLMGRKRGLLAPWAVGTIDQALMAVLRAKHNALRLFGLAGKVVVVDEAHAVDPYMQVLLEQLLRWLGTLDVPVVLLSATLHHSIANSLVKAYLEGARGRRWNRSEPQPVSEVSYPGWLHVDARIGKVTRSSDVDPLPIATTPRKPLEVRLVDVPVKEGALNRSTVLAKELTPLVKQGGCAAIICTTVAEAQGVYDLLSQWFATLAPDLYLLHSRFPNRQRTEITATIVDLFGKEGAQSGRRPTAVLVATQVVEQSLDLDVDLMISDLAPVSLLLQRAGRCWRHEHLGIINRPQWAKQPELVVLTPEQNRAPWFPRSWTSVYPLALLQRTYTLLRRRNGAPVQIPEDVQQLVDDVYDDDSLAEDLEADMERMGEELAQRGLARNAVIPDPDDAEDNLNGLTEFSFHVLATRFGAGSVRVLCYYVDTAGNRWLDPECTVEFPEQGTGREGRFTMADCRDLVARTIPVRMGPWASQLTEDNHPPEAWRESFYLRDLVLIPQRVTDAVLPTETGGREWLLDPCKGLIF 944
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383|      406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606  ||   619       629       639       649 ||    661       671       681       691       701       711      |725       735       745       755       765       775       785       795       805       815  ||   829       839       849       859       869       879       889       899       909       919||     931       941   
                                                                                                                                                                                                                                                                                                                                                                                                           383|                                                                                                                                                                                                                 609|                                   651|                                                             718|                                                                                            818|                                                                                              920|                     
                                                                                                                                                                                                                                                                                                                                                                                                            397                                                                                                                                                                                                                  613                                    654                                                              723                                                                                             823                                                                                               923                     


Chain B from PDB  Type:DNA  Length:11
                                           
                 4qqx B   1 AAAAAAAAAAA  12
                                  ||11 
                                  7|   
                                   9   


Chain C from PDB  Type:PROTEIN  Length:899
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee........eehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh...............hhhhhh...hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh..........hhhhhh......hhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhhhhhh......eeee...................hhhhh.hhhhhh.eeeeehhhhhh........hhhhhhhhheeeee......hhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhhhhhhh...................eeee.....eee.................eeeeeee.ee..ee.hhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhhhhhhh........eeeee.hhhhh.......eeeee..hhhhhhhhh.....hhhhh...........eeeeeee.......hhhhhh..hhhhhhhhhhhhhh..........hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh..hhhhhh.hhhhhh............eeeeeeeee.....ee..............hhhhh.hhhhhhhhhh.eeeee.hhhhhh.hhhhh.hhhhh........eeeeee.........ee....ee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qqx C  14 PPLDLRFWAKERGLRGKTYPLVCHSLDAAAAALVLWNEYLSPGLRDTIASSMETDEEHAGHCIAFWAGLHDIGKLTREFQQQIAIDLSAYPGEELSGEQRSHAAATGKWLPFALPSLGYPNGGLVTGLVAQMLGGHHGTFHPHPSFQSRNPLAEFGFSSPHWEKQRHALLHAVFDATGRPTPPDMLDGPTASVVCGLVILADWLVSQEDFLLERLTSLPADGSASALRAHFETSLRRIPSLLDAAGLRPITVPPATFTESFPHLSKPNGLQASLAKHLPCLCTGPGLVLITAPMGEGKTEAAYHVADLLGKATGRPGRFLALPTMATADQMHTRLKEYARYRVENTSSTLALLHSMAWLNPDYAPADPFAATDWLMGRKRGLLAPWAVGTIDQALMAVLRAKHNALRLFGLAGKVVVVDEAHAVDPYMQVLLEQLLRWLGTLDVPVVLLSATLHHSIANSLVKAYLEGARGRRWNRSEPQPVSEVSYPGWLHVDARIGKVTRSSDVDPLPIATTPRKPLEVRLVDVPVKEGALNRSTVLAKELTPLVKQGGCAAIICTTVAEAQGVYDLLSQWFATLGEPDLYLLHSRFPNRQRTEITATIVDLFGKEGAQSGRRPTRGAVLVATQVVEQSLDLDVDLMISDLAPVSLLLQRAGRCWRHEHLGIINRPQWAKQPELVVLTPEQNAPWFPRSWTSVYPLALLQRTYTLLRRRNGAPVQIPEDVQQLVDDVYDDDSLAEDLEADMERMGEELAQRGLARNAVIPDPDDAEDNLNGLTEFSVLATRFGAGSVRVLCYYVDTAGNRWLDPECTVEFPEQGTGREGRFTMADCRDLVARTIPVRMGPWASQLTEDNHPPEAWRESFYLRDLVLIPQRVTDEGAVLPTETGGREWLLDPCKGLIF 944
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353     ||367       377     ||402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       614       624       634       644       654       664       674       684       694       704       714   ||  729       739       749       759       769       779       789       799       809       825       835       845       855       865       875       885       895       905       915       925       935         
                                                                                                                                                                                                                                                                                                                                                                                   359|                383|                                                                                                                                                                                                                 611|                                                                                                     718|                                                                                          817|                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                    364                 399                                                                                                                                                                                                                  614                                                                                                      724                                                                                           824                                                                                                                        


Chain D from PDB  Type:DNA  Length:11
                                           
                 4qqx D   1 AAAAAAAAAAA  12
                                  ||11 
                                  7|   
                                   9   


Chain E from PDB  Type:PROTEIN  Length:901
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee........eehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..............hhhhhh...hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh..........hhhhhh......hhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhhhhhh......eeee..................hhhhhh..hhhhh.eeeeehhhhhh......hhhhhhhhhhheeeee.hhhhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhh.................eeeeee.....eeehhhhh............eeeeeee.ee..ee.hhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhhhhhhhh........eeeee.hhhhh.......eeeee..hhhhhhhhhhhhhhhhh.............eeeeeee........hhhhhh..hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..........hhhhh...........eeeeeeeee.....ee....................hhhhhhhhhh..eeee.hhhhhh.hhhhh.hhhhhh.......eeeeeee.....ee.ee....eeeee...eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qqx E  14 PPLDLRFWAKERGLRGKTYPLVCHSLDAAAAALVLWNEYLSPGLRDTIASSMETDEEHAGHCIAFWAGLHDIGKLTREFQQQIAIDLSAYPGEELSGEQRSHAAATGKWLPFALPSLGYPNGGLVTGLVAQMLGGHHGTFHPHPSFQSRNPLAEFGFSSPHWEKQRHALLHAVFDATGRPTPPDMLDGPTASVVCGLVILADWLVSQEDFLLERLTSLPADGSASALRAHFETSLRRIPSLLDAAGLRPITVPPATFTESFPHLSKPNGLQASLAKHLPCLCTGPGLVLITAPMGEGKTEAAYHVADLLGKATGRPGRFLALPTMATADQMHTRLKEYARYRVENTSSTLALLHSMAWLNPDYAPADPFAATDWLMGRKRGLLAPWAVGTIDQALMAVLRAKHNALRLFGLAGKVVVVDEAHAVDPYMQVLLEQLLRWLGTLDVPVVLLSATLHHSIANSLVKAYLEGARGRRWNRSEPQPVSEVSYPGWLHVDARIGKVTRSSDVDPLPIATTPRKPLEVRLVDVPVKEGALNRSTVLAKELTPLVKQGGCAAIICTTVAEAQGVYDLLSQWFATLGEDAPDLYLLHSRFPNRQRTEITATIVDLFGKEGAQSGRRPTRGAVLVATQVVEQSLDLDVDLMISDLAPVSLLLQRAGRCWRHEHLGIINRPQWAKQPELVVLTPEQNRAPWFPRSWTSVYPLALLQRTYTLLRRRNGAPVQIPEDVQQLVDDVYDDDSLAEDLEADMERMGEELAQRGLARNAVIPDPDDAEDNLNGLTEFVLATRFGAGSVRVLCYYVDTAGNRWLDPECTVEFPEQGTGREGRFTMADCRDLVARTIPVRMGPWASQLTEDNHPPEAWRESFYLRDLVLIPQRVTDEGAVLPTETGGREWLLDPCKGLIF 944
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353     ||367       377     ||402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712     ||726       736       746       756       766       776       786       796       806       816|      833       843       853       863       873       883       893       903       913       923       933       943 
                                                                                                                                                                                                                                                                                                                                                                                   359|                383|                                                                                                                                                                                                                                                                                                                            718|                                                                                          816|                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                    364                 399                                                                                                                                                                                                                                                                                                                             723                                                                                           824                                                                                                                        


Chain F from PDB  Type:DNA  Length:11
                                           
                 4qqx F   1 AAAAAAAAAAA  12
                                  ||11 
                                  7|   
                                   9   


Chain G from PDB  Type:PROTEIN  Length:887
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee........eehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.............hhhhhh...hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh......................hhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhhhhhh....eeee..hhhhh...........hhhhhh.hhhhhh.eeeeehhhhhh......hhhhhhhhhhheeeeee.hhhhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhh.................eeeeee.....eeehhhhh............eeeeeee.ee..ee.hhhhhhhhhhhhhhh.eee..hhhhhhhhhhhhhhhhh.....eee....hhhhhhhhhhhhhhhhhhhhhh.......eee.hhhhh........eeee..hhhhhhhhh.....hhhhh...........eeeeeee........hhhhhh..hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh............hhhhhh...........eeeeeeeee..................hhhhh.hhhhhhhhhhhheeee...hhhhhhhhhh.hhhhhhhhhhhh.eeeeeee.....ee.ee....eeeee...eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qqx G  14 PPLDLRFWAKERGLRGKTYPLVCHSLDAAAAALVLWNEYLSPGLRDTIASSMETDEEHAGHCIAFWAGLHDIGKLTREFQQQIAIDLSAYPGEELSGEQRSHAAATGKWLPFALPSLGYPNGGLVTGLVAQMLGGHHGTFHPHPSFQSRNPLAEFGFSSPHWEKQRHALLHAVFDATGRPTPPDMLDGPTASVVCGLVILADWLVSQEDFLLERLTSLPADGSASALRAHFETSLRRIPSLLDAAGLRPITVPPATFTESFPHLSKPNGLQASLAKHLPCLCTGPGLVLITAPMGEGKTEAAYHVADLLGKATGRPGRFLALPTMATADQMHTRLKEYARYRVESSTLALLHSMAWLNPDYAPADPFAATDWLMGRKRGLLAPWAVGTIDQALMAVLRAKHNALRLFGLAGKVVVVDEAHAVDPYMQVLLEQLLRWLGTLDVPVVLLSATLHHSIANSLVKAYLEGARGRRWNRSEPQPVSEVSYPGWLHVDARIGKVTRSSDVDPLPIATTPRKPLEVRLVDVPVKEGALNRSTVLAKELTPLVKQAAIICTTVAEAQGVYDLLSQWFATLPDLYLLHSRFPNRQRTEITATIVDLFGKEGAQSGRRPTVLVATQVVEQSLDLDVDLMISDLAPVSLLLQRAGRCWRHEHLGIINRPQWAKQPELVVLTPEQNRAPWFPRSWTSVYPLALLQRTYTLLRRRNGAPVQIPEDVQQLVDDVYDDDSLAEDLEADMERMGEELAQRGLARNAVIPDPDDAEDNLNGLTEFSVLATRFGAGSVRVLCYYVGNRWLDPECTVEFPEQGTGREGRFTMADCRDLVARTIPVRMGPWASQLTEDNHPPEAWRESFYLRDLVLIPQRVTDEGAVLPTETGGREWLLDPCKGLIF 944
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353   ||  369       379   ||  404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574      |587       597       607 ||    621       631       641       651|      664       674       684       694       704       714   ||  728       738       748       758       768       778       788       798       808       824       834      |847       857       867       877       887       897       907       917       927       937       
                                                                                                                                                                                                                                                                                                                                                                                 357|                383|                                                                                                                                                                                   581|                     609|                                  651|                                                            718|                                                                                           817|              841|                                                                                                   
                                                                                                                                                                                                                                                                                                                                                                                  364                 399                                                                                                                                                                                    585                      614                                   655                                                             723                                                                                            824               845                                                                                                   


Chain H from PDB  Type:DNA  Length:11
                                           
                 4qqx H   1 AAAAAAAAAAA  12
                                  ||11 
                                  7|   
                                   9
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QQX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QQX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QQX)

(-) Gene Ontology  (3, 3)

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  4qqx
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  Q47PJ0_THEFY | Q47PJ0
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  Q47PJ0_THEFY | Q47PJ0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q47PJ0_THEFY | Q47PJ0: 4qqw 4qqy 4qqz

(-) Related Entries Specified in the PDB File

4qqw 4qqx 4qqz