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(-) Description

Title :  CRYSTAL STRUCTURE OF T. FUSCA CAS3
 
Authors :  A. Ke, Y. Huo, K. H. Nam
Date :  30 Jun 14  (Deposition) - 27 Aug 14  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.66
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  A,B,C,D  (1x)
Biol. Unit 6:  E,F,G,H  (1x)
Keywords :  Crispr, Cas3, Helicase, Hydrolase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Huo, K. H. Nam, F. Ding, H. Lee, L. Wu, Y. Xiao, M. D. Farchione, S. Zhou K. Rajashankar, I. Kurinov, R. Zhang, A. Ke
Structures Of Crispr Cas3 Offer Mechanistic Insights Into Cascade-Activated Dna Unwinding And Degradation.
Nat. Struct. Mol. Biol. V. 21 771 2014
PubMed-ID: 25132177  |  Reference-DOI: 10.1038/NSMB.2875

(-) Compounds

Molecule 1 - CRISPR-ASSOCIATED HELICASE, CAS3 FAMILY
    Chains: A, C, E, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B
    Expression System Strain: BL21(DE3)STAR
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TFU_1593
    Organism Scientific: THERMOBIFIDA FUSCA
    Organism Taxid: 269800
    Strain: YX
 
Molecule 2 - DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
    Chains: B, D, F, H
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH
Biological Unit 5 (1x): ABCD    
Biological Unit 6 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1FE8Ligand/IonFE (III) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
Biological Unit 6 (0, 0)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:84 , HIS A:115 , HIS A:149 , HIS A:150 , FE A:1002 , DA B:12BINDING SITE FOR RESIDUE FE A 1001
2AC2SOFTWAREHIS A:37 , HIS A:83 , ASP A:84 , ASP A:215 , FE A:1001 , DA B:12BINDING SITE FOR RESIDUE FE A 1002
3AC3SOFTWAREASP C:84 , HIS C:115 , HIS C:149 , HIS C:150 , FE C:1002 , DA D:12BINDING SITE FOR RESIDUE FE C 1001
4AC4SOFTWAREHIS C:37 , HIS C:83 , ASP C:84 , ASP C:215 , FE C:1001 , DA D:12BINDING SITE FOR RESIDUE FE C 1002
5AC5SOFTWAREASP E:84 , HIS E:115 , HIS E:149 , HIS E:150 , FE E:1002 , DA F:12BINDING SITE FOR RESIDUE FE E 1001
6AC6SOFTWAREHIS E:37 , HIS E:83 , ASP E:84 , ASP E:215 , FE E:1001 , DA F:12BINDING SITE FOR RESIDUE FE E 1002
7AC7SOFTWAREASP G:84 , HIS G:115 , HIS G:149 , HIS G:150 , FE G:1002 , DA H:12BINDING SITE FOR RESIDUE FE G 1001
8AC8SOFTWAREHIS G:37 , HIS G:83 , ASP G:84 , ASP G:215 , FE G:1001 , DA H:12BINDING SITE FOR RESIDUE FE G 1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QQW)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Tyr A:519 -Pro A:520
2Ala A:613 -Pro A:614
3Ile A:757 -Pro A:758
4Ala A:844 -Gly A:845
5Arg C:363 -Ser C:364
6Tyr C:519 -Pro C:520
7Glu C:611 -Asp C:612
8Ile C:757 -Pro C:758
9Ala C:844 -Gly C:845
10Tyr E:519 -Pro E:520
11Ala E:613 -Pro E:614
12Ile E:757 -Pro E:758
13Ala E:844 -Gly E:845
14Tyr G:519 -Pro G:520
15Ala G:613 -Pro G:614
16Ile G:757 -Pro G:758

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QQW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QQW)

(-) Exons   (0, 0)

(no "Exon" information available for 4QQW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:911
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee........eehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..............hhhhhh...hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhh......hhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhhhhhh..........eeee...........................hhhhh..hhhhh.eeeeehhhhhhhhh...hhhhhhhhhhheeeee.hhhhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhh.................eeeeee.....eeehhhhh............eeeeeee.ee..ee.hhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhhhhhhhhhhhhh......eeee.hhhhh.......eeeee..hhhhhhhhhhhh..................eeeeeee........hhhhhh..hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhh..hhhhh..............eeeeeeeee.....ee..............hhhhh.hhhhhhhhhh..eeee.hhhhhh.hhhhh.hhhhhhhhhhhh.eeeeeee.....ee.eee..eeeeee...eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qqw A  14 PPLDLRFWAKERGLRGKTYPLVCHSLDAAAAALVLWNEYLSPGLRDTIASSMETDEEHAGHCIAFWAGLHDIGKLTREFQQQIAIDLSAYPGEELSGEQRSHAAATGKWLPFALPSLGYPNGGLVTGLVAQMLGGHHGTFHPHPSFQSRNPLAEFGFSSPHWEKQRHALLHAVFDATGRPTPPDMLDGPTASVVCGLVILADWLVSQEDFLLERLTSLPADGSASALRAHFETSLRRIPSLLDAAGLRPITVPPATFTESFPHLSKPNGLQASLAKHLPCLCTGPGLVLITAPMGEGKTEAAYHVADLLGKATGRPGRFLALPTMATADQMHTRLKEYARYRVENTDLPRSSTLALLHSMAWLNPDYAPAVLSNLGHRDPFAATDWLMGRKRGLLAPWAVGTIDQALMAVLRAKHNALRLFGLAGKVVVVDEAHAVDPYMQVLLEQLLRWLGTLDVPVVLLSATLHHSIANSLVKAYLEGARGRRWNRSEPQPVSEVSYPGWLHVDARIGKVTRSSDVDPLPIATTPRKPLEVRLVDVPVKEGALNRSTVLAKELTPLVKQGGCAAIICTTVAEAQGVYDLLSQWFATLAPDLYLLHSRFPNRQRTEITATIVDLFGKEGAQSGRRPTAVLVATQVVEQSLDLDVDLMISDLAPVSLLLQRAGRCWRHEHLGIINRPQWAKQPELVVLTPEQNRAPWFPRSWTSVYPLALLQRTYTLLRRRNGAPVQIPEDVQQLVDDVYDDDSLAEDLEADMERMGEELAQRGLARNAVIPDPDDAEDNLNGLTEFSFHVLATRFGAGSVRVLCYYVDTAGNRWLDPECTVEFPEQGTGREGRFTMADCRDLVARTIPVRMGPWASQLTEDNHPPEAWRESFYLRDLVLIPQRVTDEGAVLPTETGGREWLLDPCKGLIF 944
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383|      400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       613       623       633       643       655       665       675       685       695       705       715  ||   729       739       749       759       769       779       789       799       809       823       833       843       853       863       873       883       893       903       913       923       933       943 
                                                                                                                                                                                                                                                                                                                                                                                                           383|                                                                                                                                                                                                                       609|                                   651|                                                             718|                                                                                            818|                                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                            391                                                                                                                                                                                                                        613                                    654                                                              723                                                                                             823                                                                                                                         


Chain B from PDB  Type:DNA  Length:11
                                           
                 4qqw B   1 AAAAAAAAAAA  12
                                  ||11 
                                  7|   
                                   9   


Chain C from PDB  Type:PROTEIN  Length:902
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee........eehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..............hhhhhh...hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhh......hhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhhhhhh.......eeee..hhhhh...........hhhhhh..hhhhh.eeeeehhhhhh......hhhhhhhhhhheeeee.hhhhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhh.................eeeeee.....eee.................eeeeeee.ee..ee.hhhhhhhhhhhhhhhheeeeee..hhhhhhhhhhhhhhhh........eeeee....hhhhhhhhhhhhhhhhhhhhhhh......eeeeee.hhhhh.......eeeee..hhhhhhhhhh....hhhhh...........eeeeeee.......hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhh..hhhhh............eeeeeeeee.....ee..............hhhhh.hhhhhhhhhh..eeee.hhhhhh.hhhhh.hhhhhhh......eeeeeee.....ee.eee..eeeeee...eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qqw C  14 PPLDLRFWAKERGLRGKTYPLVCHSLDAAAAALVLWNEYLSPGLRDTIASSMETDEEHAGHCIAFWAGLHDIGKLTREFQQQIAIDLSAYPGEELSGEQRSHAAATGKWLPFALPSLGYPNGGLVTGLVAQMLGGHHGTFHPHPSFQSRNPLAEFGFSSPHWEKQRHALLHAVFDATGRPTPPDMLDGPTASVVCGLVILADWLVSQEDFLLERLTSLPADGSASALRAHFETSLRRIPSLLDAAGLRPITVPPATFTESFPHLSKPNGLQASLAKHLPCLCTGPGLVLITAPMGEGKTEAAYHVADLLGKATGRPGRFLALPTMATADQMHTRLKEYARYRVENTRSSTLALLHSMAWLNPDYAPADPFAATDWLMGRKRGLLAPWAVGTIDQALMAVLRAKHNALRLFGLAGKVVVVDEAHAVDPYMQVLLEQLLRWLGTLDVPVVLLSATLHHSIANSLVKAYLEGARGRRWNRSEPQPVSEVSYPGWLHVDARIGKVTRSSDVDPLPIATTPRKPLEVRLVDVPVKEGALNRSTVLAKELTPLVKQGGCAAIICTTVAEAQGVYDLLSQWFATLGEDAPDLYLLHSRFPNRQRTEITATIVDLFGKEGAQSGRRPTRGAVLVATQVVEQSLDLDVDLMISDLAPVSLLLQRAGRCWRHEHLGIINRPQWAKQPELVVLTPEQNAPWFPRSWTSVYPLALLQRTYTLLRRRNGAPVQIPEDVQQLVDDVYDDDSLAEDLEADMERMGEELAQRGLARNAVIPDPDDAEDNLNGLTEFSVLATRFGAGSVRVLCYYVDTAGNRWLDPECTVEFPEQGTGREGRFTMADCRDLVARTIPVRMGPWASQLTEDNHPPEAWRESFYLRDLVLIPQRVTDEGAVLPTETGGREWLLDPCKGLIF 944
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353     ||366       376      |401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711      |726       736       746       756       766       776       786       796       806       816||     832       842       852       862       872       882       892       902       912       922       932       942  
                                                                                                                                                                                                                                                                                                                                                                                   359|                 383|                                                                                                                                                                                                                                                                                                                            718|                                                                                          817|                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                    363                  399                                                                                                                                                                                                                                                                                                                             724                                                                                           824                                                                                                                        


Chain D from PDB  Type:DNA  Length:11
                                           
                 4qqw D   1 AAAAAAAAAAA  12
                                  ||11 
                                  7|   
                                   9   


Chain E from PDB  Type:PROTEIN  Length:897
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee........eehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..............hhhhhh...hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh..........hhhhhh....hhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhhhhhh.......eeee..hhhhh............hhhhh..hhhhh.eeeeehhhhhhhhh...hhhhhhhhhh.eeeee.hhhhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhh.................eeeeee.....eeehhhhh............eeeeeee.ee..ee.hhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhhhhhhhh.......eeeee.hhhhh.......eeeee..hhhhhhhhhhhh..................eeeeeee........hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...hhhhh..hhhhh...........eeeeeeeee.....ee....................hhhhhhhhhh..eeee.hhhhh........hhhhhhh......eeeeeee.....ee.eee..eeeeee...eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qqw E  14 PPLDLRFWAKERGLRGKTYPLVCHSLDAAAAALVLWNEYLSPGLRDTIASSMETDEEHAGHCIAFWAGLHDIGKLTREFQQQIAIDLSAYPGEELSGEQRSHAAATGKWLPFALPSLGYPNGGLVTGLVAQMLGGHHGTFHPHPSFQSRNPLAEFGFSSPHWEKQRHALLHAVFDATGRPTPPDMLDGPTASVVCGLVILADWLVSQEDFLLERLTSLPADGSASALRAHFETSLRRIPSLLDAAGLRPITVPPATFTESFPHKPNGLQASLAKHLPCLCTGPGLVLITAPMGEGKTEAAYHVADLLGKATGRPGRFLALPTMATADQMHTRLKEYARYRVENTRSSTLALLHSMAWLNPDYAPADPFAATDWLMGRKRGLLAPWAVGTIDQALMAVLRAKHNALRLFGLAGKVVVVDEAHAVDPYMQVLLEQLLRWLGTLDVPVVLLSATLHHSIANSLVKAYLEGARGRRWNRSEPQPVSEVSYPGWLHVDARIGKVTRSSDVDPLPIATTPRKPLEVRLVDVPVKEGALNRSTVLAKELTPLVKQGGCAAIICTTVAEAQGVYDLLSQWFATLAPDLYLLHSRFPNRQRTEITATIVDLFGKEGAQSGRRPTRGAVLVATQVVEQSLDLDVDLMISDLAPVSLLLQRAGRCWRHEHLGIINRPQWAKQPELVVLTPEQNRAPWFPRSWTSVYPLALLQRTYTLLRRRNGAPVQIPEDVQQLVDDVYDDDSLAEDLEADMERMGEELAQRGLARNAVIPDPDDAEDNLNGLTEFVLATRFGAGSVRVLCYYVDTAGNRWLDPECTVEFPEQGTGREGRFTMADCRDLVARTIPVRMGPWASQLTEDNHPPEAWRESFYLRDLVLIPQRVTDEGAVLPTETGGREWLLDPCKGLIF 944
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273  ||   285       295       305       315       325       335       345       355   ||  368       378    || 403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603     ||616       626       636       646       656       666       676       686       696       706       716 ||    730       740       750       760       770       780       790       800       810     ||827       837       847       857       867       877       887       897       907       917       927       937       
                                                                                                                                                                                                                                                                                                276|                                                                             359|                 383|                                                                                                                                                                                                               609|                                                                                                      718|                                                                                          816|                                                                                                                        
                                                                                                                                                                                                                                                                                                 279                                                                              363                  399                                                                                                                                                                                                                613                                                                                                       723                                                                                           824                                                                                                                        


Chain F from PDB  Type:DNA  Length:11
                                           
                 4qqw F   1 AAAAAAAAAAA  12
                                  ||11 
                                  7|   
                                   9   


Chain G from PDB  Type:PROTEIN  Length:898
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee........eehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..............hhhhhh...hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhh......hhhhhhhhhhh.......eeeeee.....hhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhhhhhh.....eeee..hhhhh............hhhhh..hhhhh.eeeeehhhhhhhhh...hhhhhhhhhhheeeee.hhhhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhh.................eeeeee.....eee.................eeeeeee........hhhhhhhhhhhhhhhheeeeee..hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhhhhhh......eeeeee.hhhhh.......eeeee..hhhhhhhhhh....................eeeeeee........hhhhhh..hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...hhhhh..hhhhh............eeeeeeeee.....ee..............hhhhh.hhhhhhhhhh..eeee.hhhhhhhhhhhh.hhhhh.hhhhhh.eeeeeee.....ee.eee..eeeeee...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qqw G  14 PPLDLRFWAKERGLRGKTYPLVCHSLDAAAAALVLWNEYLSPGLRDTIASSMETDEEHAGHCIAFWAGLHDIGKLTREFQQQIAIDLSAYPGEELSGEQRSHAAATGKWLPFALPSLGYPNGGLVTGLVAQMLGGHHGTFHPHPSFQSRNPLAEFGFSSPHWEKQRHALLHAVFDATGRPTPPDMLDGPTASVVCGLVILADWLVSQEDFLLERLTSLPADGSASALRAHFETSLRRIPSLLDAAGLRPITVPPATFTESFPHLSKPNGLQASLAKHLPCLCTGPGLVLITAPMGEGKTEAAYHVADLLGKATGRPGRFLALPTMATADQMHTRLKEYARYRVENSSTLALLHSMAWLNPDYAPADPFAATDWLMGRKRGLLAPWAVGTIDQALMAVLRAKHNALRLFGLAGKVVVVDEAHAVDPYMQVLLEQLLRWLGTLDVPVVLLSATLHHSIANSLVKAYLEGARGRRWNRSEPQPVSEVSYPGWLHVDARIGKVTRSSDVDPLPIATTPRKPLEVRLVDVPVKEGALNRSTVLAKELTPLVKQGGCAAIICTTVAEAQGVYDLLSQWFATLAPDLYLLHSRFPNRQRTEITATIVDLFGKEGAQSGRRPTRGAVLVATQVVEQSLDLDVDLMISDLAPVSLLLQRAGRCWRHEHLGIINRPQWAKQPELVVLTPEQNRAPWFPRSWTSVYPLALLQRTYTLLRRRNGAPVQIPEDVQQLVDDVYDDDSLAEDLEADMERMGEELAQRGLARNAVIPDPDDAEDNLNGLTEFSVLATRFGAGSVRVLCYYVDTAGNRWLDPECTVEFPEQGTGREGRFTMADCRDLVARTIPVRMGPWASQLTEDNHPPEAWRESFYLRDLVLIPQRVTDEGAVLPTETGGREWLLDPCKGLIF 944
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353    || 368       378    || 403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603     ||616       626       636       646       656       666       676       686       696       706       716 ||    730       740       750       760       770       780       790       800       810      |826       836       846       856       866       876       886       896       906       916       926       936        
                                                                                                                                                                                                                                                                                                                                                                                  358|                383|                                                                                                                                                                                                               609|                                                                                                      718|                                                                                           817|                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                   364                 399                                                                                                                                                                                                                613                                                                                                       723                                                                                            824                                                                                                                        


Chain H from PDB  Type:DNA  Length:11
                                           
                 4qqw H   1 AAAAAAAAAAA  12
                                  ||11 
                                  7|   
                                   9
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QQW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QQW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QQW)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

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Asymmetric Unit
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    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
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  Cis Peptide Bonds
    Ala A:613 - Pro A:614   [ RasMol ]  
    Ala A:844 - Gly A:845   [ RasMol ]  
    Ala C:844 - Gly C:845   [ RasMol ]  
    Ala E:613 - Pro E:614   [ RasMol ]  
    Ala E:844 - Gly E:845   [ RasMol ]  
    Ala G:613 - Pro G:614   [ RasMol ]  
    Arg C:363 - Ser C:364   [ RasMol ]  
    Glu C:611 - Asp C:612   [ RasMol ]  
    Ile A:757 - Pro A:758   [ RasMol ]  
    Ile C:757 - Pro C:758   [ RasMol ]  
    Ile E:757 - Pro E:758   [ RasMol ]  
    Ile G:757 - Pro G:758   [ RasMol ]  
    Tyr A:519 - Pro A:520   [ RasMol ]  
    Tyr C:519 - Pro C:520   [ RasMol ]  
    Tyr E:519 - Pro E:520   [ RasMol ]  
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  4qqw
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  Q47PJ0_THEFY | Q47PJ0
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  Q47PJ0_THEFY | Q47PJ0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q47PJ0_THEFY | Q47PJ0: 4qqx 4qqy 4qqz

(-) Related Entries Specified in the PDB File

4qqx 4qqy 4qqz