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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF THE MEMBRANE TRANSPORTER FHAC (DOUBLE MUTANT V169T, I176N)
 
Authors :  T. Maier, B. Clantin, F. Gruss, F. Dewitte, A. S. Delattre, F. Jacob-Dub S. Hiller, V. Villeret
Date :  10 Jun 14  (Deposition) - 17 Jun 15  (Release) - 14 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Beta-Barrel, Potra Domain, Protein Transport, Outer Membrane (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Maier, B. Clantin, F. Gruss, F. Dewitte, A. S. Delattre, F. Jacob-Dubuisson, S. Hiller, V. Villeret
Conserved Omp85 Lid-Lock Structure And Substrate Recognitio In Fhac
Nat Commun V. 6 7452 2015
PubMed-ID: 26058369  |  Reference-DOI: 10.1038/NCOMMS8452
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FILAMENTOUS HEMAGGLUTININ TRANSPORTER PROTEIN FHAC
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PFJD138
    Expression System Strain: BL21(DE3)-OMP5
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BP1884, FHAC
    Mutation: YES
    Organism Scientific: BORDETELLA PERTUSSIS
    Organism Taxid: 257313
    Strain: TOHAMA I / ATCC BAA-589 / NCTC 13251
    Synonym: TPSB TRANSPORTER

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 9)

Asymmetric Unit (7, 9)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2BOG3Ligand/IonB-OCTYLGLUCOSIDE
3P6G1Ligand/IonHEXAETHYLENE GLYCOL
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
5PG41Ligand/IonTETRAETHYLENE GLYCOL
6PGE1Ligand/IonTRIETHYLENE GLYCOL
7PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (7, 18)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2BOG6Ligand/IonB-OCTYLGLUCOSIDE
3P6G2Ligand/IonHEXAETHYLENE GLYCOL
4PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
5PG42Ligand/IonTETRAETHYLENE GLYCOL
6PGE2Ligand/IonTRIETHYLENE GLYCOL
7PO42Ligand/IonPHOSPHATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:284 , GLY A:311 , LEU A:312 , LYS A:313 , LEU A:332BINDING SITE FOR RESIDUE PGE A 601
2AC2SOFTWAREARG A:108 , TYR A:110 , PHE A:170 , ARG A:320 , ASP A:321 , 1PE A:607BINDING SITE FOR RESIDUE PEG A 602
3AC3SOFTWAREGLY A:183 , ARG A:208 , ALA A:209 , ALA A:238 , ASN A:239 , HOH A:771BINDING SITE FOR RESIDUE BOG A 603
4AC4SOFTWAREARG A:135 , ARG A:152 , MET A:153 , TYR A:198 , HOH A:725 , HOH A:734BINDING SITE FOR RESIDUE BOG A 604
5AC5SOFTWAREGLY A:277 , ARG A:278 , ARG A:316 , HOH A:723BINDING SITE FOR RESIDUE PO4 A 605
6AC6SOFTWAREHIS A:57 , ASN A:91 , GLU A:147 , ASP A:194 , GLU A:195 , TYR A:196 , HOH A:762BINDING SITE FOR RESIDUE BOG A 606
7AC7SOFTWAREPHE A:170 , ASP A:171 , ARG A:278 , LEU A:318 , TYR A:319 , ARG A:320 , ASP A:321 , PEG A:602BINDING SITE FOR RESIDUE 1PE A 607
8AC8SOFTWAREARG A:29 , ASN A:180 , ASN A:181BINDING SITE FOR RESIDUE PG4 A 608
9AC9SOFTWAREARG A:29 , GLN A:174 , TYR A:177 , ASN A:178 , PRO A:275 , GLY A:277 , ARG A:278 , THR A:279 , ARG A:280 , LYS A:313 , THR A:315 , LEU A:317 , GLN A:325 , SER A:327 , GLN A:361 , HOH A:769BINDING SITE FOR RESIDUE P6G A 609

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QL0)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Pro A:119 -Pro A:120

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QL0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QL0)

(-) Exons   (0, 0)

(no "Exon" information available for 4QL0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:520
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..............................eeeeehhhhh....hhhhhhhhh....hhhhhhhhhhhhhhhhhhh.....eeeeeeeeee..eeeeeee..eeeeeee..ee..hhhhhhhhhhhh........hhhhhhhhhhhhh...eeeeeeeee.....eeeeeeeeee....eeeeeee........eeeeeeeeeeeee.......eeeeeeeeeee......eeeeeeeeeeeee..eeeeeeeeeeeeeee......eeeeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeeeee..eeeeeeeeeee...eeeeeeeeeeeee....eeeeeeeeeeee.....hhhhheee..............eee.eeeeeeeeee..eee..eeeeeeeeeeeeeee...eeeeeeeeeeeeee..eeeeeeeeee...........eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ql0 A   3 QLLPGARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEAAAPARKPDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDGVLKLKVEWGRIKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNTFDIDQANYNINNGGKTGNITIVPADEYGYSYLDLQLQRRALPRVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLGRTRLDLQTGYSTYRNLLKYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLDVSSKHYSDVTVGMQYSTQRGANAYFGDLSFTRGVSRFNGSLAWTRYMALAGQPIQWASQLGFQYSRQQLLNSYQITVGDEYTVRGYNLRTSQSGDSGVYLSNTLTVPVQFSQASVAPFVGADVGALKSRTIRMAGLAAGVRFDLPYARMSFTYSKPVGAQPAPRAPVWLYINAGLSF 554
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292  ||   304       314       324       334       344       354       364       374     ||403       413       423       433       443       453       463       473   ||  487       497||     512       522       532   ||  544       554
                                                                                                                                                                                                                                                                                                                              295|                                                                               380|                                                                          477|             498|                             536|               
                                                                                                                                                                                                                                                                                                                               298                                                                                400                                                                           482              504                              539
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QL0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QL0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QL0)

(-) Gene Ontology  (9, 9)

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  4ql0
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  FHAC_BORPE | P35077
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FHAC_BORPE | P35077: 3njt 4qky

(-) Related Entries Specified in the PDB File

2qdz INITIAL REFINEMENT AT 3.15 ANGSTROM OF WT FHAC (SUPERSEDED)
4qky STRUCTURE OF WT FHAC REFINED AT 2.9 ANGSTROM RESOLUTION