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(-) Description

Title :  CRYSTAL STRUCTURE OF THE R450A MUTANT OF THE MEMBRANE PROTEIN FHAC
 
Authors :  B. Clantin, A. S. Delattre, F. Jacob-Dubuisson, V. Villeret
Date :  18 Jun 10  (Deposition) - 03 Nov 10  (Release) - 19 Jan 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Membrane Protein, Beta Barrel, Omp85/Tpsb Transporter Family, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Delattre, B. Clantin, N. Saint, C. Locht, V. Villeret, F. Jacob-Dubuisson
Functional Importance Of A Conserved Sequence Motif In Fhac A Prototypic Member Of The Tpsb/Omp85 Superfamily.
Febs J. V. 277 4755 2010
PubMed-ID: 20955520  |  Reference-DOI: 10.1111/J.1742-4658.2010.07881.X

(-) Compounds

Molecule 1 - FILAMENTOUS HEMAGGLUTININ TRANSPORTER PROTEIN FHAC
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PFJD118-R450A
    Expression System Strain: BL21 DE3 OMP5
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 34-584
    Gene: FHAC, BP1884
    Mutation: YES
    Organism Scientific: BORDETELLA PERTUSSIS
    Organism Taxid: 520
    Strain: TOHAMA 1
    Synonym: TPSB TRANSPORTER

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3NJT)

(-) Sites  (0, 0)

(no "Site" information available for 3NJT)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NJT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3NJT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NJT)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1POTRAPS51779 POTRA domain profile.FHAC_BORPE89-164  1A:62-134

(-) Exons   (0, 0)

(no "Exon" information available for 3NJT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:450
 aligned with FHAC_BORPE | P35077 from UniProtKB/Swiss-Prot  Length:584

    Alignment length:552
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582  
           FHAC_BORPE    33 QLLPGARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEAAAPARKPDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDGVLKLKVEWGRIKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGGKTGNITIVPADEYGYSYLDLQLQRRALPRVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLGRTRLDLQTGYSTYRNLLKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLDVSSKHYSDVTVGMQYSTQRGANAYFGDLSFTRGVGVNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQWASQLGFQYSRQQLLNSYQITVGDEYTVRGYNLRTSQSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGADVGALKSNHPDARTIRMAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGLSF 584
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ----------------------------                               POTRA_2-3njtA02 A:62-134                                                 ----------------ShlB-3njtA01 A:151-531                                                                                                                                                                                                                                                                                                                                                                                  ------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhh.-------------------------------..eeee..........hhhhhhhh....hhhhhhhhhhhhhhhhhhh.....eee..........eeeeee..eeeeeee..ee..hhhhhhhhhhhh........hhhhhhhhhhhhh...eeeeeeeee.....eeeeeeeeee....eeeeeee..--------..eeeeeeeee.......eeeeeeeee........eeeeeeeeeeeee..eeeeeeeeeeeee...-------..eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeee.---------.eeeeeeeeeeeee....eeeeeeeeeeee...--------------...eeeeeeeeeeeeeee..eeeeeeeeeeee............----------------------......eeeeeeeeeee.....eeeeeeeeeeeee.....eeeeeeeeeeeeeee...eeeeeeeee.-----------..eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------POTRA  PDB: A:62-134 UniProt: 89-164                                        ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3njt A   3 SLLPGARDLNRIDDRQRKEQLQRDIERA-------------------------------HAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDGVLKLKVEWGRIKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGGKTGNITIVPADEYGYSYLDLQLQRRALPRVSLGMDNS--------RYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLGRTRLDLQTGYSTYRNLL-------QSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYL---------KHYSDVTVGMQYSTQRGANAYFGDLSFTRGVGV--------------GNVSRFNGSLAWTRYMALAGQPIQWASQLGFQYSRQQLLNSYQI----------------------VYLSNTLTVPVQFSLLGKQASVAPFVGADVGALKSNHPDARTIRMAGLAAGVRFDLPYARMSFTYSKP-----------PVWLYINAGLSF 554
                                    12        22       | -         -         -        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       | -      |232       242       252       262       272       282       292 |     302       312       322       332        |-       352       362       372       382|        -     | 402       412       422       432        |-         -         - |     472       482       492       502       512       522        |-         -|      552  
                                                      30                              62                                                                                                                                                           220      229                                                              294     302                                    341       351                             383            398                                        441                    464                                                                531         543
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NJT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NJT)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Clan: MBB (97)
(-)
Clan: POTRA (5)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (FHAC_BORPE | P35077)
molecular function
    GO:0015288    porin activity    Catalysis of the transfer of substances, sized less than 1000 Da, from one side of the membrane to the other. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria.
biological process
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0046930    pore complex    Any small opening in a membrane that allows the passage of gases and/or liquids.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FHAC_BORPE | P35077: 4qky 4ql0

(-) Related Entries Specified in the PDB File

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