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(-) Description

Title :  CRYSTAL STRUCTURE OF N-MYRISTOYL TRANSFERASE FROM ASPERGILLUS FUMIGATUS COMPLEXED WITH A SYNTHETIC INHIBITOR
 
Authors :  M. Suzuki, T. Shimada
Date :  08 May 14  (Deposition) - 01 Apr 15  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Myristoyl-Coa, Myristate Translocation, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Shimada, M. Suzuki, S. Katakura
Structure Of N-Myristoyltransferase From Aspergillus Fumigatus
Acta Crystallogr. , Sect. D V. 71 754 2015
PubMed-ID: 25849386  |  Reference-DOI: 10.1107/S1399004715000401

(-) Compounds

Molecule 1 - GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE
    Chains: A
    EC Number: 2.3.1.97
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 101-492
    Gene: NMT1
    Organism Scientific: ASPERGILLUS FUMIGATUS
    Organism Taxid: 330879
    Strain: AF293

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
12XQ1Ligand/Ion3-[[3-METHYL-2-[[2,3,4-TRIS(FLUORANYL)PHENOXY]METHYL]-1-BENZOFURAN-4-YL]OXY]-N-(PYRIDIN-3-YLMETHYL)PROPAN-1-AMINE
2NHM1Ligand/IonS-(2-OXO)PENTADECYLCOA
3SO43Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:126 , THR A:127 , LYS A:449 , HOH A:669 , HOH A:735BINDING SITE FOR RESIDUE SO4 A 501
2AC2SOFTWAREARG A:182 , ARG A:187BINDING SITE FOR RESIDUE SO4 A 502
3AC3SOFTWARESER A:285 , ARG A:289 , GLN A:290BINDING SITE FOR RESIDUE SO4 A 503
4AC4SOFTWAREHIS A:146 , TYR A:147 , VAL A:148 , GLU A:149 , ASN A:213 , PHE A:214 , LEU A:215 , ILE A:217 , ARG A:222 , SER A:223 , LYS A:224 , ARG A:225 , LEU A:226 , THR A:227 , THR A:235 , CYS A:238 , ILE A:243 , TYR A:244 , TYR A:248 , THR A:249 , LEU A:254 , HOH A:640BINDING SITE FOR RESIDUE NHM A 504
5AC5SOFTWARETYR A:147 , PHE A:157 , TYR A:159 , ASN A:213 , PHE A:214 , TYR A:263 , HIS A:265 , PHE A:278 , SER A:378 , VAL A:389 , TYR A:393 , VAL A:432 , ASN A:434 , ALA A:435 , LEU A:492 , HOH A:701BINDING SITE FOR RESIDUE 2XQ A 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QBJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QBJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QBJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QBJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4QBJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:396
                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhh..........eeeee....hhhhhhhhhhhhhhhh.......eeee.hhhhhhhhhh....hhh.eeeeee.....eeeeeeeeeeeeee..eeeeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeee........eeeeeeeee.hhhhhhhh.........hhhhhhhhh..........eee.hhhhhhhhhhhhhhhhh...eee..hhhhhhhhhh..........eeeeeee......eeeeeeeeeeeeee.......eeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhh......eeeeeeeeeeee.................hhhhh..ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qbj A  97 GSHMGGPIKIIDPEKVSKEPDALLEGFEWATLDLTNETELQELWDLLTYHYVEDDNAMFRFRYSQSFLHWALMSPGWKKEWHVGVRATKSRKLVASICGVPTEINVRNQKLKVVEINFLCIHKKLRSKRLTPVLIKEITRRCYLNGIYQAIYTAGVVLPTPVSSCRYYHRPLDWLKLYEVGFSPLPAGSTKARQITKNHLPSTTSTPGLRPMEPKDIDTVHDLLQRYLSRFALNQAFTREEVDHWLVHKPETVKEQVVWAYVVEDPETHKITDFFSFYNLESTVIQNPKHDNVRAAYLYYYATETAFTNNMKALKERLLMLMNDALILAKKAHFDVFNALTLHDNPLFLEQLKFGAGDGQLHFYLYNYRTAPVPGGVNEKNLPDEKRMGGVGIVML 492
                                   106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QBJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QBJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QBJ)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        NMT_ASPFU | Q9UVX3: 4cav 4caw 4cax 4uwi 4uwj

(-) Related Entries Specified in the PDB File

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