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(-) Description

Title :  CRYSTAL STRUCTURE OF ASPERGILLUS FUMIGATUS N-MYRISTOYL TRANSFERASE IN COMPLEX WITH MYRISTOYL COA AND A BENZOFURAN LIGAND R0-09-4879
 
Authors :  D. A. Robinson, W. Fang, O. G. Raimi, D. E. Blair, J. Harrison, G. F. Ruda, D. E. A. Lockhart, L. S. Torrie, P. G. Wyatt, I. H. Gilbert, D. M. F. Van A
Date :  09 Oct 13  (Deposition) - 17 Sep 14  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.89
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Drug Discovery (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Fang, D. A. Robinson, O. G. Raimi, D. E. Blair, J. R. Harrison, D. E. A. Lockhart, L. S. Torrie, G. F. Ruda, P. G. Wyatt, I. H. Gilbert, D. M. F. Van Aalten
N-Myristoyltransferase Is A Cell Wall Target In Aspergillus Fumigatus.
Acs Chem. Biol. V. 10 1425 2015
PubMed-ID: 25706802  |  Reference-DOI: 10.1021/CB5008647

(-) Compounds

Molecule 1 - GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE
    Chains: A
    EC Number: 2.3.1.97
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Variant: PLYSS
    Expression System Vector: PGEX-6P1
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 86-492
    Organism Scientific: ASPERGILLUS FUMIGATUS
    Organism Taxid: 746128
    Synonym: MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE, NMT, PEPTIDE N-MYRISTOYLTRANSFERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
12XQ1Ligand/Ion3-[[3-METHYL-2-[[2,3,4-TRIS(FLUORANYL)PHENOXY]METHYL]-1-BENZOFURAN-4-YL]OXY]-N-(PYRIDIN-3-YLMETHYL)PROPAN-1-AMINE
2CL1Ligand/IonCHLORIDE ION
3MYA1Ligand/IonTETRADECANOYL-COA

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARE2XQ A:1494BINDING SITE FOR RESIDUE CL A1493
2AC2SOFTWARETYR A:147 , PHE A:155 , PHE A:157 , TYR A:159 , PHE A:214 , TYR A:264 , HIS A:265 , LEU A:273 , PHE A:278 , LEU A:376 , VAL A:389 , TYR A:393 , VAL A:432 , ASN A:434 , ALA A:435 , LEU A:492 , CL A:1493BINDING SITE FOR RESIDUE 2XQ A1494
3AC3SOFTWARETYR A:147 , VAL A:148 , ASN A:213 , PHE A:214 , LEU A:215 , CYS A:216 , ILE A:217 , ARG A:222 , SER A:223 , LYS A:224 , ARG A:225 , LEU A:226 , THR A:227 , ILE A:231 , THR A:235 , CYS A:238 , ILE A:243 , TYR A:244 , GLN A:245 , ALA A:246 , TYR A:248 , THR A:249 , VAL A:252 , LEU A:254 , TYR A:462 , HOH A:2176 , HOH A:2177 , HOH A:2178 , HOH A:2265 , HOH A:2403 , HOH A:2405 , HOH A:2406 , HOH A:2407 , HOH A:2408 , HOH A:2409 , HOH A:2410 , HOH A:2411BINDING SITE FOR RESIDUE MYA A1495

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CAV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4CAV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CAV)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NMT_1PS00975 Myristoyl-CoA:protein N-myristoyltransferase signature 1.NMT_ASPFU211-219  1A:211-219
2NMT_2PS00976 Myristoyl-CoA:protein N-myristoyltransferase signature 2.NMT_ASPFU449-455  1A:449-455

(-) Exons   (0, 0)

(no "Exon" information available for 4CAV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:392
 aligned with NMT_ASPFU | Q9UVX3 from UniProtKB/Swiss-Prot  Length:492

    Alignment length:392
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490  
            NMT_ASPFU   101 GGPIKIIDPEKVSKEPDALLEGFEWATLDLTNETELQELWDLLTYHYVEDDNAMFRFRYSQSFLHWALMSPGWKKEWHVGVRATKSRKLVASICGVPTEINVRNQKLKVVEINFLCIHKKLRSKRLTPVLIKEITRRCYLNGIYQAIYTAGVVLPTPVSSCRYYHRPLDWLKLYEVGFSPLPAGSTKARQITKNHLPSTTSTPGLRPMEPKDIDTVHDLLQRYLSRFALNQAFTREEVDHWLVHKPETVKEQVVWAYVVEDPETHKITDFFSFYNLESTVIQNPKHDNVRAAYLYYYATETAFTNNMKALKERLLMLMNDALILAKKAHFDVFNALTLHDNPLFLEQLKFGAGDGQLHFYLYNYRTAPVPGGVNEKNLPDEKRMGGVGIVML 492
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...................eeeee....hhhhhhhhhhhhhhhh.......eeee.hhhhhhhhhh....hhh.eeeeee.....eeeeeeeeeeeeee..eeeeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhh.....eeeee........eeeeeeeee.hhhhhhhh.........hhhhhhhhhh.........eee.hhhhhhhhhhhhhhhhhh..eee..hhhhhhhhhh..........eeeeeee......eeeeeeeeeeeeee.......eeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhh......eeeeeeeeeeee.ee..............hhhhh..ee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------NMT_1    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NMT_2  ------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cav A 101 GGPIKIIDPEKVSKEPDALLEGFEWATLDLTNETELQELWDLLTYHYVEDDNAMFRFRYSQSFLHWALMSPGWKKEWHVGVRATKSRKLVASICGVPTEINVRNQKLKVVEINFLCIHKKLRSKRLTPVLIKEITRRCYLNGIYQAIYTAGVVLPTPVSSCRYYHRPLDWLKLYEVGFSPLPAGSTKARQITKNHLPSTTSTPGLRPMEPKDIDTVHDLLQRYLSRFALNQAFTREEVDHWLVHKPETVKEQVVWAYVVEDPETHKITDFFSFYNLESTVIQNPKHDNVRAAYLYYYATETAFTNNMKALKERLLMLMNDALILAKKAHFDVFNALTLHDNPLFLEQLKFGAGDGQLHFYLYNYRTAPVPGGVNEKNLPDEKRMGGVGIVML 492
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CAV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CAV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CAV)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (NMT_ASPFU | Q9UVX3)
molecular function
    GO:0004379    glycylpeptide N-tetradecanoyltransferase activity    Catalysis of the reaction: tetradecanoyl-CoA + glycyl-peptide = CoA + N-tetradecanoylglycyl-peptide.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
    GO:0006499    N-terminal protein myristoylation    The covalent attachment of a myristoyl group to the N-terminal amino acid residue of a protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NMT_ASPFU | Q9UVX3: 4caw 4cax 4qbj 4uwi 4uwj

(-) Related Entries Specified in the PDB File

4caw CRYSTAL STRUCTURE OF ASPERGILLUS FUMIGATUS N-MYRISTOYL TRANSFERASE IN COMPLEX WITH MYRISTOYL COA AND A PYRAZOLE SULPHONAMIDE LIGAND
4cax CRYSTAL STRUCTURE OF ASPERGILLUS FUMIGATUS N-MYRISTOYL TRANSFERASE IN COMPLEX WITH MYRISTOYL COA AND A PYRAZOLE SULPHONAMIDE LIGAND (DDD85646)