4Q8B - JenaLib

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Title :   THE CRYSTAL STRUCTURE OF COTA LACCASE COMPLEXED WITH SINAPIC ACID

Authors :   T. Xie, Z. C. Liu, G. G. Wang

Date :   26 Apr 14 (Deposition) - 29 Apr 15 (Release) - 29 Apr 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.91

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Laccase, Oxidoreductase, Sinapic Acid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Xie, Z. C. Liu, G. G. Wang
The Crystal Structure Of Cota Laccase Complexed With Sinapi Acid
To Be Published
PubMed: search

Molecule 1 - SPORE COAT PROTEIN A
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	COTA, PIG, BSU06300
	Organism Scientific	:	BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
	Organism Taxid	:	224308
	Strain	:	168

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 18)

No.	Name	Count	Type	Full Name
1	CL	5	Ligand/Ion	CHLORIDE ION
2	CU	8	Ligand/Ion	COPPER (II) ION
3	MG	2	Ligand/Ion	MAGNESIUM ION
4	OXY	1	Ligand/Ion	OXYGEN MOLECULE
5	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL
6	SXX	1	Ligand/Ion	SINAPINATE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CU	-1	Ligand/Ion	COPPER (II) ION
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	OXY	1	Ligand/Ion	OXYGEN MOLECULE
5	PGE	-1	Ligand/Ion	TRIETHYLENE GLYCOL
6	SXX	-1	Ligand/Ion	SINAPINATE

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CU	-1	Ligand/Ion	COPPER (II) ION
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	OXY	-1	Ligand/Ion	OXYGEN MOLECULE
5	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL
6	SXX	1	Ligand/Ion	SINAPINATE

Asymmetric Unit (17, 17)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:419 , CYS A:492 , HIS A:497 , MET A:502	BINDING SITE FOR RESIDUE CU A 601
02	AC2	SOFTWARE	HIS A:105 , HIS A:107 , HIS A:422 , HIS A:424 , OXY A:605 , HOH A:741	BINDING SITE FOR RESIDUE CU A 602
03	AC3	SOFTWARE	HIS A:155 , HIS A:424 , HIS A:491 , OXY A:605	BINDING SITE FOR RESIDUE CU A 603
04	AC4	SOFTWARE	HIS A:107 , HIS A:153 , HIS A:493 , OXY A:605	BINDING SITE FOR RESIDUE CU A 604
05	AC5	SOFTWARE	HIS A:105 , HIS A:107 , HIS A:153 , HIS A:155 , HIS A:422 , HIS A:424 , HIS A:491 , HIS A:493 , CU A:602 , CU A:603 , CU A:604 , HOH A:1144	BINDING SITE FOR RESIDUE OXY A 605
06	AC6	SOFTWARE	SER A:186 , ARG A:248	BINDING SITE FOR RESIDUE CL A 607
07	AC7	SOFTWARE	ASN A:264 , SER A:293	BINDING SITE FOR RESIDUE CL A 608
08	AC8	SOFTWARE	HOH A:1146 , HOH A:1147 , HOH A:1150 , HOH A:1151 , HOH A:1152 , HOH A:1153	BINDING SITE FOR RESIDUE MG A 609
09	AC9	SOFTWARE	HOH A:751 , HOH A:986 , HOH A:1108 , HOH A:1154	BINDING SITE FOR RESIDUE MG A 610
10	BC1	SOFTWARE	HIS B:419 , CYS B:492 , HIS B:497 , MET B:502	BINDING SITE FOR RESIDUE CU B 601
11	BC2	SOFTWARE	HIS B:105 , HIS B:107 , HIS B:422 , HIS B:424 , CU B:603 , HOH B:721	BINDING SITE FOR RESIDUE CU B 602
12	BC3	SOFTWARE	HIS B:155 , HIS B:424 , HIS B:491 , CU B:602 , HOH B:701	BINDING SITE FOR RESIDUE CU B 603
13	BC4	SOFTWARE	HIS B:107 , HIS B:153 , HIS B:493 , HOH B:701	BINDING SITE FOR RESIDUE CU B 604
14	BC5	SOFTWARE	PRO B:226 , GLY B:376 , THR B:377 , LEU B:386 , THR B:415 , ARG B:416 , GLY B:417 , HOH B:774 , HOH B:945 , HOH B:1074	BINDING SITE FOR RESIDUE SXX B 605
15	BC6	SOFTWARE	LYS B:25 , TYR B:27 , TYR B:69	BINDING SITE FOR RESIDUE PGE B 606
16	BC7	SOFTWARE	GLY B:376 , GLN B:442 , HOH B:945	BINDING SITE FOR RESIDUE CL B 607
17	BC8	SOFTWARE	GLY B:404	BINDING SITE FOR RESIDUE CL B 608

Asymmetric Unit

No.	Residues
1	A:322	-	A:229
2	B:322	-	B:229

Asymmetric Unit

No.	Residues
1	Phe A:55	-	Pro A:56
2	Asn A:221	-	Pro A:222
3	Gly A:482	-	Pro A:483
4	Tyr A:500	-	Asp A:501
5	Phe B:55	-	Pro B:56
6	Asn B:221	-	Pro B:222
7	Gly B:482	-	Pro B:483
8	Tyr B:500	-	Asp B:501

(no "SAP(SNP)/Variant" information available for 4Q8B)

(no "PROSITE Motif" information available for 4Q8B)

(no "Exon" information available for 4Q8B)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:499
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................ee....eeeeeeeeeeee........eeeeee........eeee....eeeeeee......................eeee....hhhhh.......hhhhh.........eeee......eeeeeee....hhhhhhhh..eeeeeeehhhhhhhh..hhh.eeeeeeeeeee.....ee........................eeee..ee..eee....eeeeeeee......eeeee.....eeeeee..eeeeeeeee.eeee....eeeeeee.hhhh..eeeeee..............eeeeee.........................eeeeeeeeeee.....eeeee.................eeeeeeee.....eeeee....eeeeeeee.hhhhhhhhh...........hhhhh....eeee...eeeeeeee.....eeeeeee.hhhhhh...eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q8b A   2 TLEKFVDALPIPDTLKPVQQSKEKTYYEVTMEECTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHEPEVKTVVHLHGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSAGCGGDVNPETDANIMQFRVTKPLAQKDESRKPKYLASYPERIQNIRTLKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHILEHEDYDMMRPMDITDP 511
                                    11        21        31        41        51        61        71        81       |98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358||     372       382       392       402       412       422       432       442       452       462       472       482       492       502         
                                                                                                                  89|                                                                                                                                                                                                                                                                   359|                                                                                                                                                   
                                                                                                                   97                                                                                                                                                                                                                                                                    364

Chain B from PDB  Type:PROTEIN  Length:499
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................ee....eeeeeeeeeeee........eeeeee........eeee....eeeeeeee.........hhhhh.........eeee....hhhhh.......hhhhh.........eeee......eeeeeee....hhhhhhhhh.eeeeeeehhhhhhhh..hhh.eeeeeeeeeee.....ee........................eeee..ee..eee....eeeeeeee......eeeee.....eeeeee..eeeeeeeee..eee....eeeeeee.hhhh..eeeeee..............eeeeee......................eeeeeeeeeee.....eeeee.................eeeeeeee.....eeeee....eeeeeeee.hhhhhhhhh...........hhhhh....eeee...eeeeeeee.....eeeeeee.hhhhhh...eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q8b B   2 TLEKFVDALPIPDTLKPVQQSKEKTYYEVTMEECTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHEEPEVKTVVHLHGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSAGCGGDVNPETDANIMQFRVTKPLAQKDESRKPKYLASYPQNIRTLKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHILEHEDYDMMRPMDITDPH 512
                                    11        21        31        41        51        61        71        81        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356  ||   373       383       393       403       413       423       433       443       453       463       473       483       493       503         
                                                                                                                   90|                                                                                                                                                                                                                                                                    359|                                                                                                                                                 
                                                                                                                    96                                                                                                                                                                                                                                                                     367

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4Q8B)

(no "CATH Domain" information available for 4Q8B)

(no "Pfam Domain" information available for 4Q8B)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
		Asn A:221 - Pro A:222	[ RasMol ]
		Asn B:221 - Pro B:222	[ RasMol ]
		Gly A:482 - Pro A:483	[ RasMol ]
		Gly B:482 - Pro B:483	[ RasMol ]
		Phe A:55 - Pro A:56	[ RasMol ]
		Phe B:55 - Pro B:56	[ RasMol ]
		Tyr A:500 - Asp A:501	[ RasMol ]
		Tyr B:500 - Asp B:501	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 18)

Sites (17, 17)

SS Bonds (2, 2)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (7, 7)

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