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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COTA NATIVE ENZYME
 
Authors :  T. Xie, Z. C. Liu, G. G. Wang
Date :  26 Apr 14  (Deposition) - 29 Apr 15  (Release) - 29 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.31
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Laccase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Xie, Z. C. Liu, G. G. Wang
The Crystal Structure Of Cota Laccase Complexed With Sinapi Acid
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SPORE COAT PROTEIN A
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: DH5A
    Expression System Taxid: 562
    Gene: COTA, PIG, BSU06300
    Organism Scientific: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
    Organism Taxid: 224308
    Strain: 168

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2CU8Ligand/IonCOPPER (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2CU-1Ligand/IonCOPPER (II) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2CU-1Ligand/IonCOPPER (II) ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:419 , CYS A:492 , HIS A:497 , MET A:502BINDING SITE FOR RESIDUE CU A 601
02AC2SOFTWAREHIS A:105 , HIS A:107 , HIS A:422 , HIS A:424 , HOH A:895BINDING SITE FOR RESIDUE CU A 602
03AC3SOFTWAREHIS A:155 , HIS A:424 , HIS A:491 , HOH A:962 , HOH A:1058BINDING SITE FOR RESIDUE CU A 603
04AC4SOFTWAREHIS A:107 , HIS A:153 , HIS A:493 , HOH A:962BINDING SITE FOR RESIDUE CU A 604
05AC5SOFTWAREASN A:264 , SER A:293BINDING SITE FOR RESIDUE CL A 605
06AC6SOFTWAREPRO A:185 , SER A:186 , ARG A:248BINDING SITE FOR RESIDUE CL A 606
07AC7SOFTWAREHIS B:419 , CYS B:492 , HIS B:497 , MET B:502BINDING SITE FOR RESIDUE CU B 601
08AC8SOFTWAREHIS B:105 , HIS B:107 , HIS B:422 , HIS B:424 , HOH B:791BINDING SITE FOR RESIDUE CU B 602
09AC9SOFTWAREHIS B:155 , HIS B:422 , HIS B:424 , HIS B:491 , HOH B:994BINDING SITE FOR RESIDUE CU B 603
10BC1SOFTWAREHIS B:107 , HIS B:153 , HIS B:493 , HOH B:994BINDING SITE FOR RESIDUE CU B 604

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:322 -A:229
2B:322 -B:229

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Phe A:55 -Pro A:56
2Asn A:221 -Pro A:222
3Gly A:482 -Pro A:483
4Tyr A:500 -Asp A:501
5Phe B:55 -Pro B:56
6Asn B:221 -Pro B:222
7Gly B:482 -Pro B:483
8Tyr B:500 -Asp B:501

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Q89)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Q89)

(-) Exons   (0, 0)

(no "Exon" information available for 4Q89)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:501
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eee..eeeeeeeeeeeee........eeeeee........eeee....eeeeeee..........hhhhh..........eeee....hhhhh.......hhhhh.........eeee......eeeeeee....hhhhhhhh..eeeeeeehhhhhhhh..hhh.eeeeeeeee.................................eeee..ee..eee....eeeeeeee......eeeee.....eeeeee..eeeeeeeee..eee....eeeeeee.hhhh..eeeeee..............eeeeee.......................eeeeeeeeee.....eeeee.................eeeeeeee.....eeeee.....eeeeeee.hhhhhhhhh...........hhhhh....eeee...eeeeeeee.....eeeeeee.hhhhhh...eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q89 A   1 MTLEKFVDALPIPDTLKPVQQSKEKTYYEVTMEECTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHQHEEPEVKTVVHLHGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSAGCGGDVNPETDANIMQFRVTKPLAQKDESRKPKYLASYIQNIRTLKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHILEHEDYDMMRPMDITDPH 512
                                    10        20        30        40        50        60        70        80        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354   ||  371       381       391       401       411       421       431       441       451       461       471       481       491       501       511 
                                                                                                                   89|                                                                                                                                                                                                                                                                     358|                                                                                                                                                  
                                                                                                                    94                                                                                                                                                                                                                                                                      366                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:499
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................ee....eeeeeeeeeeee........eeeeee.....eeeeeee....eeeeeeee.........hhhhh........eeee....hhhhh.......hhhhh.........eeee......eeeeeee....hhhhhhhh..eeeeeeehhhhhhhh..hhh.eeeeeeeeeee.....ee........................eeee..ee..eee....eeeeeeee......eeeee.....eeeeee..eeeeeeeee.eeee....eeeeeee.hhhh..eeeeee..............eeeeee........................eeeeeeeeeee.....eeeee.................eeeeeeee.....eeeee.....eeeeeee.hhhhhhhhh...........hhhhh....eeee...eeeeeeee.....eeeeeee.hhhhhh...eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q89 B   2 TLEKFVDALPIPDTLKPVQQSKEKTYYEVTMEECTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHEEPEVKTVVHLHGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSAGCGGDVNPETDANIMQFRVTKPLAQKDESRKPKYLASYPRIQNIRTLKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHILEHEDYDMMRPMDITDP 511
                                    11        21        31        41        51        61        71        81       |97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357 ||    372       382       392       402       412       422       432       442       452       462       472       482       492       502         
                                                                                                                  89|                                                                                                                                                                                                                                                                    359|                                                                                                                                                  
                                                                                                                   96                                                                                                                                                                                                                                                                     365
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Q89)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Q89)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Q89)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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  4q89
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  COTA_BACSU | P07788
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COTA_BACSU | P07788: 1gsk 1of0 1w6l 1w6w 1w8e 2bhf 2wsd 2x87 2x88 3zdw 4a66 4a67 4a68 4ako 4akp 4akq 4q8b 4yvn 4yvu

(-) Related Entries Specified in the PDB File

4q8b