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(-) Description

Title :  SHIGELLA EFFECTOR KINASE OSPG BOUND TO E2-UB UBCH7-UB CONJUGATE
 
Authors :  M. Cygler, A. M. Grishin, Montreal-Kingston Bacterial Structural Initiative (Bsgi)
Date :  16 Apr 14  (Deposition) - 02 Jul 14  (Release) - 09 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.87
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Protein-Protein Complex, Structural Genomics, Montreal-Kingston Bacterial Structural Genomics Initiative, Bsgi, Kinase Fold, Inhibition Of Nf-Kb Pathway, Unknown Function, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. M. Grishin, T. E. Condos, K. R. Barber, F. X. Campbell-Valois, C. Parsot, G. S. Shaw, M. Cygler
Structural Basis For The Inhibition Of Host Protein Ubiquitination By Shigella Effector Kinase Ospg.
Structure V. 22 878 2014
PubMed-ID: 24856362  |  Reference-DOI: 10.1016/J.STR.2014.04.010

(-) Compounds

Molecule 1 - PROTEIN KINASE OSPG
    ChainsA
    EC Number2.7.-.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPMCSG7
    Expression System StrainBL21(DE3)STAR
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 26-193
    GeneOSPG, SSON_P170
    Organism ScientificSHIGELLA SONNEI SS046
    Organism Taxid300269
    Strain2457T
    SynonymEFFECTOR PROTEIN OSPG
 
Molecule 2 - POLYUBIQUITIN
    ChainsB
    EC Number6.3.2.19
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28A
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneSCD2, UBE2L3, UBI4, YLL039C
    MutationYES
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid559292
    StrainATCC 204508 / S288C
    SynonymUBIQUITIN
 
Molecule 3 - UBIQUITIN-CONJUGATING ENZYME E2 L3
    ChainsC
    EC Number6.3.2.19
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET3A
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneUBCE7, UBCH7, UBE2L3, UBI4
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymL-UBC, UBCH7, UBIQUITIN CARRIER PROTEIN L3, UBIQUITIN- CONJUGATING ENZYME E2-F1, UBIQUITIN-PROTEIN LIGASE L3

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4Q5E)

(-) Sites  (0, 0)

(no "Site" information available for 4Q5E)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1B:76 -C:86

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Pro C:44 -Pro C:45
2Tyr C:61 -Pro C:62

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Q5E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Q5E)

(-) Exons   (0, 0)

(no "Exon" information available for 4Q5E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:168
                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee...eeeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeee....ee.hhhhhhhh..hhhhhhhhhhhhhhhh.......hhh.eeee....eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4q5e A  26 EPILGKLIGQGSTAEIFEDVNDSSALYKKYDLIGNQYNEILEMAWQESELFNAFYGDEASVVIQYGGDVYLRMLRVPGTPLSDIDTADIPDNIESLYLQLICKLNELSIIHYDLNTGNMLYDKESESLFPIDFRNIYAEYYAATKKDKEIIDRRLQMRTNDFYSLLNR 193
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185        

Chain B from PDB  Type:PROTEIN  Length:76
                                                                                                            
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.....eeeee..ee......hhhhh.....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4q5e B   1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQKESTLHLVLRLRGC  76
                                    10        20        30        40        50        60        70      

Chain C from PDB  Type:PROTEIN  Length:155
                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh...eeeeee......eeeeee...........eeeeee..........eeee................hhhhh........hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q5e C   0 HMAASRRLMKELEEIRKSGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFSKNAEEFTKKYGEKRPVD 154
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Q5E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Q5E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Q5E)

(-) Gene Ontology  (42, 48)

Asymmetric/Biological Unit(hide GO term definitions)

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(no "Sites" information available for 4q5e)
 
  Cis Peptide Bonds
    Pro C:44 - Pro C:45   [ RasMol ]  
    Tyr C:61 - Pro C:62   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OSPG_SHISS | Q3YTH24q5h
        UB2L3_HUMAN | P680361c4z 1fbv 3sqv 3sy2 4q5h 5hpt 5udh
        UBI4P_YEAST | P0CG631otr 1q0w 1wr1 1zgu 1zw7 2g3q 2jt4 2jwz 2kdi 2l00 3cmm 3l0w 3l10 3olm 4hcn 4nnj 4q5h

(-) Related Entries Specified in the PDB File

4q5h