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(-) Description

Title :  SHIGELLA EFFECTOR KINASE OSPG BOUND TO AMPPNP AND E2-UB UBCH7-UB CONJUGATE
 
Authors :  M. Cygler, A. M. Grishin, Montreal-Kingston Bacterial Structural Initiative (Bsgi)
Date :  16 Apr 14  (Deposition) - 02 Jul 14  (Release) - 02 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Protein-Protein Complex, Structural Genomics, Montreal-Kingston Bacterial Structural Genomics Initiative, Bsgi, Kinase Fold, Inhibition Of Nf-Kb Pathway, Unknown Function, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Grishin, T. E. Condos, K. R. Barber, F. X. Campbell-Valois, C. Parsot, G. S. Shaw, M. Cygler
Structural Basis For The Inhibition Of Host Protein Ubiquitination By Shigella Effector Kinase Ospg.
Structure V. 22 878 2014
PubMed-ID: 24856362  |  Reference-DOI: 10.1016/J.STR.2014.04.010

(-) Compounds

Molecule 1 - PROTEIN KINASE OSPG
    Chains: A
    EC Number: 2.7.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)STAR
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 26-193
    Gene: OSPG, SSON_P170
    Organism Scientific: SHIGELLA SONNEI
    Organism Taxid: 300269
    Strain: 2457T
    Synonym: EFFECTOR PROTEIN OSPG
 
Molecule 2 - POLYUBIQUITIN
    Chains: B
    EC Number: 6.3.2.19
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SCD2, UBE2L3, UBI4, YLL039C
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: UBIQUITIN
 
Molecule 3 - UBIQUITIN-CONJUGATING ENZYME E2 L3
    Chains: C
    EC Number: 6.3.2.19
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: UBCE7, UBCH7, UBE2L3, UBI4
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: L-UBC, UBCH7, UBIQUITIN CARRIER PROTEIN L3, UBIQUITIN- CONJUGATING ENZYME E2-F1, UBIQUITIN-PROTEIN LIGASE L3

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:157 , HOH A:377 , HOH A:378 , HOH A:396 , HOH A:397 , HOH A:398BINDING SITE FOR RESIDUE MG A 201
2AC2SOFTWAREGLY A:36 , THR A:38 , ALA A:39 , ILE A:41 , LEU A:51 , LYS A:53 , PHE A:76 , MET A:98 , LEU A:99 , VAL A:101 , PRO A:105 , GLY A:142 , ASN A:143 , ILE A:156 , ASP A:157 , HOH A:329 , HOH A:377 , HOH A:380 , HOH A:408BINDING SITE FOR RESIDUE ANP A 202

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1B:76 -C:86

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Pro C:44 -Pro C:45
2Tyr C:61 -Pro C:62

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Q5H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Q5H)

(-) Exons   (0, 0)

(no "Exon" information available for 4Q5H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:169
                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee...eeeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeee....ee.hhhhhhhh..hhhhhhhhhhhhhhhh...........eeee....eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q5h A  25 AEPILGKLIGQGSTAEIFEDVNDSSALYKKYDLIGNQYNEILEMAWQESELFNAFYGDEASVVIQYGGDVYLRMLRVPGTPLSDIDTADIPDNIESLYLQLICKLNELSIIHYDLNTGNMLYDKESESLFPIDFRNIYAEYYAATKKDKEIIDRRLQMRTNDFYSLLNR 193
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184         


Chain B from PDB  Type:PROTEIN  Length:76
                                                                                                            
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4q5h B   1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQKESTLHLVLRLRGC  76
                                    10        20        30        40        50        60        70      


Chain C from PDB  Type:PROTEIN  Length:155
                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh...eeeeeee..eeeeeeeee...........eeeeee..........eeee................hhhhh........hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q5h C   0 HMAASRRLMKELEEIRKSGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFSKNAEEFTKKYGEKRPVD 154
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Q5H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Q5H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Q5H)

(-) Gene Ontology  (42, 48)

Asymmetric/Biological Unit(hide GO term definitions)

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  4q5h
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OSPG_SHISS | Q3YTH2: 4q5e
        UB2L3_HUMAN | P68036: 1c4z 1fbv 3sqv 3sy2 4q5e 5hpt 5udh
        UBI4P_YEAST | P0CG63: 1otr 1q0w 1wr1 1zgu 1zw7 2g3q 2jt4 2jwz 2kdi 2l00 3cmm 3l0w 3l10 3olm 4hcn 4nnj 4q5e

(-) Related Entries Specified in the PDB File

4qse SHIGELLA EFFECTOR KINASE OSPG BOUND TO E2-UB UBCH7-UB CONJUGATE