Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)

(-) Description

Title :  CYTOCHROME B6F STRUCTURE FROM M. LAMINOSUS WITH THE QUINONE ANALOG INHIBITOR STIGMATELLIN
 
Authors :  S. S. Hasan, E. Yamashita, W. A. Cramer
Date :  14 Mar 14  (Deposition) - 20 Aug 14  (Release) - 14 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D,E,F,G,H  (2x)
Keywords :  Alpha Helix, Beta Sheet, Plastoquinol:Plastocyanin Oxidoreductase, Plastocyanin, Thylakoid Membrane, Electron Transport-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. S. Hasan, E. A. Proctor, E. Yamashita, N. V. Dokholyan, W. A. Cramer
Traffic Within The Cytochrome B6F Lipoprotein Complex: Gating Of The Quinone Portal.
Biophys. J. V. 107 1620 2014
PubMed-ID: 25296314  |  Reference-DOI: 10.1016/J.BPJ.2014.08.003

(-) Compounds

Molecule 1 - CYTOCHROME B6
    ChainsA
    Organism ScientificMASTIGOCLADUS LAMINOSUS
    Organism Taxid83541
 
Molecule 2 - CYTOCHROME B6-F COMPLEX SUBUNIT 4
    ChainsB
    Organism ScientificMASTIGOCLADUS LAMINOSUS
    Organism Taxid83541
    Synonym17 KDA POLYPEPTIDE
 
Molecule 3 - APOCYTOCHROME F
    ChainsC
    FragmentUNP RESIDUES 45-333
    Organism ScientificMASTIGOCLADUS LAMINOSUS
    Organism Taxid83541
 
Molecule 4 - CYTOCHROME B6-F COMPLEX IRON-SULFUR SUBUNIT
    ChainsD
    EC Number1.10.9.1
    Organism ScientificMASTIGOCLADUS LAMINOSUS
    Organism Taxid83541
 
Molecule 5 - CYTOCHROME B6-F COMPLEX SUBUNIT 6
    ChainsE
    Organism ScientificMASTIGOCLADUS LAMINOSUS
    Organism Taxid83541
    SynonymCYTOCHROME B6-F COMPLEX SUBUNIT PETL, CYTOCHROME B6-F COMPLEX SUBUNIT VI
 
Molecule 6 - CYTOCHROME B6-F COMPLEX SUBUNIT 7
    ChainsF
    Organism ScientificMASTIGOCLADUS LAMINOSUS
    Organism Taxid83541
    SynonymCYTOCHROME B6-F COMPLEX SUBUNIT PETM, CYTOCHROME B6-F COMPLEX SUBUNIT VII
 
Molecule 7 - CYTOCHROME B6-F COMPLEX SUBUNIT 5
    ChainsG
    Organism ScientificMASTIGOCLADUS LAMINOSUS
    Organism Taxid83541
    SynonymCYTOCHROME B6-F COMPLEX SUBUNIT PETG, CYTOCHROME B6-F COMPLEX SUBUNIT V
 
Molecule 8 - CYTOCHROME B6-F COMPLEX SUBUNIT 8
    ChainsH
    Organism ScientificMASTIGOCLADUS LAMINOSUS
    Organism Taxid83541
    SynonymCYTOCHROME B6-F COMPLEX SUBUNIT PETN, CYTOCHROME B6-F COMPLEX SUBUNIT VIII

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (2x)ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (12, 20)

Asymmetric Unit (12, 20)
No.NameCountTypeFull Name
17PH1Ligand/Ion(1R)-2-(DODECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYLTETRADECANOATE
28K61Ligand/IonOCTADECANE
3BCR1Ligand/IonBETA-CAROTENE
4CD2Ligand/IonCADMIUM ION
5CLA1Ligand/IonCHLOROPHYLL A
6FES1Ligand/IonFE2/S2 (INORGANIC) CLUSTER
7HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
8MYS1Ligand/IonPENTADECANE
9OPC3Ligand/Ion(7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE
10SMA1Ligand/IonSTIGMATELLIN A
11SQD1Ligand/Ion1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
12UMQ3Ligand/IonUNDECYL-MALTOSIDE
Biological Unit 1 (11, 36)
No.NameCountTypeFull Name
17PH2Ligand/Ion(1R)-2-(DODECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYLTETRADECANOATE
28K62Ligand/IonOCTADECANE
3BCR2Ligand/IonBETA-CAROTENE
4CD-1Ligand/IonCADMIUM ION
5CLA2Ligand/IonCHLOROPHYLL A
6FES2Ligand/IonFE2/S2 (INORGANIC) CLUSTER
7HEM8Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
8MYS2Ligand/IonPENTADECANE
9OPC6Ligand/Ion(7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE
10SMA2Ligand/IonSTIGMATELLIN A
11SQD2Ligand/Ion1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
12UMQ6Ligand/IonUNDECYL-MALTOSIDE

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:130 , THR A:134 , LEU A:169 , ALA A:186BINDING SITE FOR RESIDUE MYS A 301
02AC2SOFTWAREGLU A:75 , HIS C:143 , HOH C:1101 , HOH C:1102BINDING SITE FOR RESIDUE CD A 302
03AC3SOFTWAREPHE A:44 , GLN A:47 , PHE A:48 , GLY A:51 , PHE A:52 , MET A:54 , ARG A:83 , HIS A:86 , ALA A:90 , MET A:93 , PHE A:131 , GLY A:135 , LEU A:138 , PRO A:139 , HIS A:187 , THR A:188 , PHE A:189BINDING SITE FOR RESIDUE HEM A 303
04AC4SOFTWARETYR A:34 , GLY A:37 , THR A:40 , MET A:93 , HIS A:100 , VAL A:101 , ARG A:103 , VAL A:104 , GLY A:109 , ARG A:114 , THR A:117 , TRP A:118 , GLY A:121 , MET A:199 , HIS A:202 , PHE A:203 , ILE A:206 , ILE A:211 , SER A:212 , HEM A:305 , HOH A:401 , HOH A:402BINDING SITE FOR RESIDUE HEM A 304
05AC5SOFTWAREASN A:31 , TYR A:34 , CYS A:35 , GLY A:38 , THR A:42 , ILE A:206 , ARG A:207 , GLY A:210 , ILE A:211 , HEM A:304 , SMA A:308 , HOH A:401 , ASN B:25 , PHE B:40 , ARG H:26BINDING SITE FOR RESIDUE HEM A 305
06AC6SOFTWARELEU A:12 , LEU A:17 , LYS A:208 , UMQ A:307BINDING SITE FOR RESIDUE UMQ A 306
07AC7SOFTWAREASP A:6 , ILE A:14 , GLN A:15 , ALA A:18 , UMQ A:306 , UMQ B:203 , OPC D:203BINDING SITE FOR RESIDUE UMQ A 307
08AC8SOFTWARELYS A:24 , ARG A:207 , HEM A:305 , LEU B:36 , PHE B:40 , UMQ B:203BINDING SITE FOR RESIDUE SMA A 308
09AC9SOFTWAREPHE A:78 , PHE B:48 , 8K6 B:201 , ARG C:254 , TRP C:257 , PHE C:261 , GLY D:33 , ALA D:34 , TYR D:36 , PRO D:37BINDING SITE FOR RESIDUE 7PH A 309
10BC1SOFTWARE7PH A:309 , PHE B:48 , ALA D:34BINDING SITE FOR RESIDUE 8K6 B 201
11BC2SOFTWAREASP B:58 , LYS C:146 , GLU G:3BINDING SITE FOR RESIDUE CD B 202
12BC3SOFTWARETHR A:22 , UMQ A:307 , SMA A:308 , TRP B:32 , SQD D:202BINDING SITE FOR RESIDUE UMQ B 203
13BC4SOFTWAREPHE A:102 , TYR A:105 , ALA A:125 , TYR B:80 , VAL B:84 , ILE B:87 , VAL B:104 , PHE B:133 , GLY B:136 , VAL B:139 , THR B:140 , OPC B:205 , HOH B:301 , HOH B:305BINDING SITE FOR RESIDUE CLA B 204
14BC5SOFTWARETYR A:105 , SER B:103 , VAL B:111 , GLU B:115 , ASN B:118 , ARG B:126 , PRO B:127 , VAL B:128 , ALA B:129 , ILE B:132 , CLA B:204BINDING SITE FOR RESIDUE OPC B 205
15BC6SOFTWARETYR C:1 , PRO C:2 , TRP C:4 , ALA C:5 , CYS C:22 , CYS C:25 , HIS C:26 , GLN C:60 , LEU C:70 , ASN C:71 , VAL C:72 , GLY C:73 , ALA C:74 , ASN C:154 , GLY C:156 , ARG C:157 , GLY C:158 , ILE C:160 , TYR C:161BINDING SITE FOR RESIDUE HEM C 301
16BC7SOFTWARECYS D:108 , HIS D:110 , LEU D:111 , CYS D:126 , HIS D:129 , SER D:131BINDING SITE FOR RESIDUE FES D 201
17BC8SOFTWARETRP B:32 , PRO B:33 , UMQ B:203 , LYS C:275 , ARG D:16 , ASN D:20BINDING SITE FOR RESIDUE SQD D 202
18BC9SOFTWAREUMQ A:307 , LEU D:38BINDING SITE FOR RESIDUE OPC D 203
19CC1SOFTWAREMET A:92 , CYS B:50 , GLN C:38 , GLY E:4 , ALA E:5 , TYR E:8 , TYR F:7 , ALA F:8 , LEU F:11 , GLY F:14 , LEU G:5 , LEU G:9 , BCR G:101 , TRP H:8 , LEU H:12 , PHE H:15BINDING SITE FOR RESIDUE OPC E 101
20CC2SOFTWAREPHE A:33 , ILE A:39 , OPC E:101 , ILE F:16 , PHE F:17 , TRP F:20 , ALA G:16 , GLY G:19 , GLY G:20 , TYR G:23BINDING SITE FOR RESIDUE BCR G 101

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1D:113 -D:128

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Lys A:112 -Pro A:113
2Trp B:32 -Pro B:33
3Gly C:117 -Pro C:118

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PV1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PV1)

(-) Exons   (0, 0)

(no "Exon" information available for 4PV1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh..ee....hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh...hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pv1 A   3 NVYDWFQERLEIQALADDVTSKYVPPHVNIFYCLGGITLTCFLIQFATGFAMTFYYKPTVTEAYASVQYIMNEVSFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWISGVILAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPEAIPVVGVLISDLLRGGSSVGQATLTRYYSAHTFVLPWLIAVFMLLHFLMIRKQGISGPL 215
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212   

Chain B from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhh........ee........hhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhh.......hhhhhhhhhhhhhhhhhhhhhh..hhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pv1 B   2 ATLKKPDLSDPKLRAKLAKGMGHNYYGEPAWPNDLLYVFPVVIMGTFACIVALSVLDPAMVGEPADPFATPLEILPEWYLYPVFQILRSVPNKLLGVLLMASVPLGLILVPFIENVNKFQNPFRRPVATTIFLFGTLVTIWLGIGATFPLDKTLTLGLF 160
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151         

Chain C from PDB  Type:PROTEIN  Length:288
                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhh..........hhhhhh.......eee...ee....eeeeeee........ee.....ee..eeeeeee.....ee.hhhhhhhhhhhhhh....ee.......eeeeeeee.....eeeeeee............eeeeeeeeeee......................................ee...............ee..........................eeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pv1 C   1 YPFWAQQTYPPTPREPTGRIVCANCHLAAKPAEVEVPQSVLPDTVFKAVVKIPYDTKLQQVAADGSKVGLNVGAVLMLPEGFKIAPEERIPEELKKEVGDVYFQPYKEGQDNVLLVGPLPGEQYQEIVFPVLSPNPTTDKNIHFGKYAIHLGANRGRGQIYPTGEKSNNNVFTASATGTITKIAKEEDEYGNVKYQVSIQTDSGKTVVDTIPAGPELIVSEGQAVKAGEALTNNPNVGGFGQDDTEIVLQDPNRVKWMIAFICLVMLAQLMLILKKKQVEKVQAAEMN 288
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280        

Chain D from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhh........eeee.hhh.eeee.......ee...........ee....ee..........................eee........eee............... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pv1 D   9 DVPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSTAKDKLGNNVKVSKFLESHNAGDRVLVQGLKGDPTYIVAIRDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDETGKVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRTGEKPWWV 179
                                    18        28        38       |56        66        76        86     ||101       111       121       131       141       151       161       171        
                                                                46|                                   92|                                                                                 
                                                                 55                                    98                                                                                 

Chain E from PDB  Type:PROTEIN  Length:28
                                                            
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                 4pv1 E   2 ILGAVFYIVFIALFFGIAVGIIFAIKSI  29
                                    11        21        

Chain F from PDB  Type:PROTEIN  Length:31
                                                               
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                 4pv1 F   2 TEEMLYAALLSFGLIFVGWGLGVLLLKIQGA  32
                                    11        21        31 

Chain G from PDB  Type:PROTEIN  Length:37
                                                                     
               SCOP domains ------------------------------------- SCOP domains
               CATH domains ------------------------------------- CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                 4pv1 G   1 MVEPLLDGLVLGLVFATLGGLFYAAYQQYKRPNELGG  37
                                    10        20        30       

Chain H from PDB  Type:PROTEIN  Length:28
                                                            
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                 4pv1 H   2 EIDVLGWVALLVVFTWSIAMVVWGRNGL  29
                                    11        21        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PV1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PV1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PV1)

(-) Gene Ontology  (23, 85)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    7PH  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    8K6  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    BCR  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CLA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FES  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    HEM  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MYS  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    OPC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SMA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SQD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    UMQ  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Gly C:117 - Pro C:118   [ RasMol ]  
    Lys A:112 - Pro A:113   [ RasMol ]  
    Trp B:32 - Pro B:33   [ RasMol ]  
 
Biological Unit
  Complete Structure
    Biological Unit 1  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4pv1
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  CYB6_MASLA | P83791
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  CYF_MASLA | P83793
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  PETD_MASLA | P83792
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  PETG_MASLA | P83797
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  PETL_MASLA | P83795
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  PETM_MASLA | P83796
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  PETN_MASLA | P83798
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  UCRI_MASLA | P83794
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.10.9.1
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  CYB6_MASLA | P83791
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  CYF_MASLA | P83793
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PETD_MASLA | P83792
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PETG_MASLA | P83797
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PETL_MASLA | P83795
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PETM_MASLA | P83796
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PETN_MASLA | P83798
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  UCRI_MASLA | P83794
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CYB6_MASLA | P837911vf5 2d2c 2e74 2e75 2e76 4h0l 4h13 4i7z
        CYF_MASLA | P837931vf5 2d2c 2e74 2e75 2e76 4h0l 4h13 4i7z
        PETD_MASLA | P837921vf5 2d2c 2e74 2e75 2e76 4h0l 4h13 4i7z
        PETG_MASLA | P837971vf5 2d2c 2e74 2e75 2e76 4h0l 4h13 4i7z
        PETL_MASLA | P837951vf5 2d2c 2e74 2e75 2e76 4h0l 4h13 4i7z
        PETM_MASLA | P837961vf5 2d2c 2e74 2e75 2e76 4h0l 4h13 4i7z
        PETN_MASLA | P837981vf5 2d2c 2e74 2e75 2e76 4h0l 4h13 4i7z
        UCRI_MASLA | P837941vf5 2d2c 2e74 2e75 2e76 4h0l 4h13 4i7z

(-) Related Entries Specified in the PDB File

1q90 1vf5 2e74 2e75 2e76 2zt9 3cx5 4h0l 4h13 4h44 4ogq