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4PV1
Biol. Unit 1
Info
Asym.Unit (353 KB)
Biol.Unit 1 (666 KB)
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(1)
Title
:
CYTOCHROME B6F STRUCTURE FROM M. LAMINOSUS WITH THE QUINONE ANALOG INHIBITOR STIGMATELLIN
Authors
:
S. S. Hasan, E. Yamashita, W. A. Cramer
Date
:
14 Mar 14 (Deposition) - 20 Aug 14 (Release) - 14 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (2x)
Keywords
:
Alpha Helix, Beta Sheet, Plastoquinol:Plastocyanin Oxidoreductase, Plastocyanin, Thylakoid Membrane, Electron Transport-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. S. Hasan, E. A. Proctor, E. Yamashita, N. V. Dokholyan, W. A. Cramer
Traffic Within The Cytochrome B6F Lipoprotein Complex: Gating Of The Quinone Portal.
Biophys. J. V. 107 1620 2014
[
close entry info
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Hetero Components
(11, 36)
Info
All Hetero Components
01a: (1R)-2-(DODECANOYLOXY)-1-[(PHOSPHO... (7PHa)
02a: OCTADECANE (8K6a)
03a: BETA-CAROTENE (BCRa)
04a: CADMIUM ION (CDa)
04b: CADMIUM ION (CDb)
05a: CHLOROPHYLL A (CLAa)
06a: FE2/S2 (INORGANIC) CLUSTER (FESa)
07a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
07b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
07c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
07d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
08a: PENTADECANE (MYSa)
09a: (7R,17E)-4-HYDROXY-N,N,N,7-TETRAME... (OPCa)
09b: (7R,17E)-4-HYDROXY-N,N,N,7-TETRAME... (OPCb)
09c: (7R,17E)-4-HYDROXY-N,N,N,7-TETRAME... (OPCc)
10a: STIGMATELLIN A (SMAa)
11a: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO... (SQDa)
12a: UNDECYL-MALTOSIDE (UMQa)
12b: UNDECYL-MALTOSIDE (UMQb)
12c: UNDECYL-MALTOSIDE (UMQc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
7PH
2
Ligand/Ion
(1R)-2-(DODECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYLTETRADECANOATE
2
8K6
2
Ligand/Ion
OCTADECANE
3
BCR
2
Ligand/Ion
BETA-CAROTENE
4
CD
-1
Ligand/Ion
CADMIUM ION
5
CLA
2
Ligand/Ion
CHLOROPHYLL A
6
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
7
HEM
8
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
8
MYS
2
Ligand/Ion
PENTADECANE
9
OPC
6
Ligand/Ion
(7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE
10
SMA
2
Ligand/Ion
STIGMATELLIN A
11
SQD
2
Ligand/Ion
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
12
UMQ
6
Ligand/Ion
UNDECYL-MALTOSIDE
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:130 , THR A:134 , LEU A:169 , ALA A:186
BINDING SITE FOR RESIDUE MYS A 301
02
AC2
SOFTWARE
GLU A:75 , HIS C:143 , HOH C:1101 , HOH C:1102
BINDING SITE FOR RESIDUE CD A 302
03
AC3
SOFTWARE
PHE A:44 , GLN A:47 , PHE A:48 , GLY A:51 , PHE A:52 , MET A:54 , ARG A:83 , HIS A:86 , ALA A:90 , MET A:93 , PHE A:131 , GLY A:135 , LEU A:138 , PRO A:139 , HIS A:187 , THR A:188 , PHE A:189
BINDING SITE FOR RESIDUE HEM A 303
04
AC4
SOFTWARE
TYR A:34 , GLY A:37 , THR A:40 , MET A:93 , HIS A:100 , VAL A:101 , ARG A:103 , VAL A:104 , GLY A:109 , ARG A:114 , THR A:117 , TRP A:118 , GLY A:121 , MET A:199 , HIS A:202 , PHE A:203 , ILE A:206 , ILE A:211 , SER A:212 , HEM A:305 , HOH A:401 , HOH A:402
BINDING SITE FOR RESIDUE HEM A 304
05
AC5
SOFTWARE
ASN A:31 , TYR A:34 , CYS A:35 , GLY A:38 , THR A:42 , ILE A:206 , ARG A:207 , GLY A:210 , ILE A:211 , HEM A:304 , SMA A:308 , HOH A:401 , ASN B:25 , PHE B:40 , ARG H:26
BINDING SITE FOR RESIDUE HEM A 305
06
AC6
SOFTWARE
LEU A:12 , LEU A:17 , LYS A:208 , UMQ A:307
BINDING SITE FOR RESIDUE UMQ A 306
07
AC7
SOFTWARE
ASP A:6 , ILE A:14 , GLN A:15 , ALA A:18 , UMQ A:306 , UMQ B:203 , OPC D:203
BINDING SITE FOR RESIDUE UMQ A 307
08
AC8
SOFTWARE
LYS A:24 , ARG A:207 , HEM A:305 , LEU B:36 , PHE B:40 , UMQ B:203
BINDING SITE FOR RESIDUE SMA A 308
09
AC9
SOFTWARE
PHE A:78 , PHE B:48 , 8K6 B:201 , ARG C:254 , TRP C:257 , PHE C:261 , GLY D:33 , ALA D:34 , TYR D:36 , PRO D:37
BINDING SITE FOR RESIDUE 7PH A 309
10
BC1
SOFTWARE
7PH A:309 , PHE B:48 , ALA D:34
BINDING SITE FOR RESIDUE 8K6 B 201
11
BC2
SOFTWARE
ASP B:58 , LYS C:146 , GLU G:3
BINDING SITE FOR RESIDUE CD B 202
12
BC3
SOFTWARE
THR A:22 , UMQ A:307 , SMA A:308 , TRP B:32 , SQD D:202
BINDING SITE FOR RESIDUE UMQ B 203
13
BC4
SOFTWARE
PHE A:102 , TYR A:105 , ALA A:125 , TYR B:80 , VAL B:84 , ILE B:87 , VAL B:104 , PHE B:133 , GLY B:136 , VAL B:139 , THR B:140 , OPC B:205 , HOH B:301 , HOH B:305
BINDING SITE FOR RESIDUE CLA B 204
14
BC5
SOFTWARE
TYR A:105 , SER B:103 , VAL B:111 , GLU B:115 , ASN B:118 , ARG B:126 , PRO B:127 , VAL B:128 , ALA B:129 , ILE B:132 , CLA B:204
BINDING SITE FOR RESIDUE OPC B 205
15
BC6
SOFTWARE
TYR C:1 , PRO C:2 , TRP C:4 , ALA C:5 , CYS C:22 , CYS C:25 , HIS C:26 , GLN C:60 , LEU C:70 , ASN C:71 , VAL C:72 , GLY C:73 , ALA C:74 , ASN C:154 , GLY C:156 , ARG C:157 , GLY C:158 , ILE C:160 , TYR C:161
BINDING SITE FOR RESIDUE HEM C 301
16
BC7
SOFTWARE
CYS D:108 , HIS D:110 , LEU D:111 , CYS D:126 , HIS D:129 , SER D:131
BINDING SITE FOR RESIDUE FES D 201
17
BC8
SOFTWARE
TRP B:32 , PRO B:33 , UMQ B:203 , LYS C:275 , ARG D:16 , ASN D:20
BINDING SITE FOR RESIDUE SQD D 202
18
BC9
SOFTWARE
UMQ A:307 , LEU D:38
BINDING SITE FOR RESIDUE OPC D 203
19
CC1
SOFTWARE
MET A:92 , CYS B:50 , GLN C:38 , GLY E:4 , ALA E:5 , TYR E:8 , TYR F:7 , ALA F:8 , LEU F:11 , GLY F:14 , LEU G:5 , LEU G:9 , BCR G:101 , TRP H:8 , LEU H:12 , PHE H:15
BINDING SITE FOR RESIDUE OPC E 101
20
CC2
SOFTWARE
PHE A:33 , ILE A:39 , OPC E:101 , ILE F:16 , PHE F:17 , TRP F:20 , ALA G:16 , GLY G:19 , GLY G:20 , TYR G:23
BINDING SITE FOR RESIDUE BCR G 101
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
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CATH Domains
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