4POP - JenaLib

Asymmetric Unit (9, 46)

No.	Name	Count	Type	Full Name
1	1PE	3	Ligand/Ion	PENTAETHYLENE GLYCOL
2	2VY	2	Ligand/Ion	4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-METHYLTHIOPHENE-2-CARBALDEHYDE
3	BNG	5	Ligand/Ion	B-NONYLGLUCOSIDE
4	P33	1	Ligand/Ion	3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
5	P6G	1	Ligand/Ion	HEXAETHYLENE GLYCOL
6	PEG	21	Ligand/Ion	DI(HYDROXYETHYL)ETHER
7	PG0	3	Ligand/Ion	2-(2-METHOXYETHOXY)ETHANOL
8	PG4	9	Ligand/Ion	TETRAETHYLENE GLYCOL
9	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 1 (8, 24)

No.	Name	Count	Type	Full Name
1	1PE	2	Ligand/Ion	PENTAETHYLENE GLYCOL
2	2VY	1	Ligand/Ion	4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-METHYLTHIOPHENE-2-CARBALDEHYDE
3	BNG	3	Ligand/Ion	B-NONYLGLUCOSIDE
4	P33	-1	Ligand/Ion	3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
5	P6G	1	Ligand/Ion	HEXAETHYLENE GLYCOL
6	PEG	10	Ligand/Ion	DI(HYDROXYETHYL)ETHER
7	PG0	2	Ligand/Ion	2-(2-METHOXYETHOXY)ETHANOL
8	PG4	4	Ligand/Ion	TETRAETHYLENE GLYCOL
9	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 2 (7, 22)

No.	Name	Count	Type	Full Name
1	1PE	1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	2VY	1	Ligand/Ion	4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-METHYLTHIOPHENE-2-CARBALDEHYDE
3	BNG	2	Ligand/Ion	B-NONYLGLUCOSIDE
4	P33	1	Ligand/Ion	3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
5	P6G	-1	Ligand/Ion	HEXAETHYLENE GLYCOL
6	PEG	11	Ligand/Ion	DI(HYDROXYETHYL)ETHER
7	PG0	1	Ligand/Ion	2-(2-METHOXYETHOXY)ETHANOL
8	PG4	5	Ligand/Ion	TETRAETHYLENE GLYCOL
9	PGE	-1	Ligand/Ion	TRIETHYLENE GLYCOL

Sites (44, 44)

Asymmetric Unit (44, 44)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TRP A:34 , GLU A:84 , TYR A:85 , HIS A:125 , GLY A:129 , TRP A:133 , TYR A:146 , ASN A:151 , HOH A:306 , HOH A:313	BINDING SITE FOR RESIDUE 2VY A 201
02	AC2	SOFTWARE	PG4 A:218	BINDING SITE FOR RESIDUE PG0 A 202
03	AC3	SOFTWARE	LEU A:148	BINDING SITE FOR RESIDUE PG0 A 203
04	AC4	SOFTWARE	MET A:68 , ILE A:69 , BNG A:205 , PG4 A:219	BINDING SITE FOR RESIDUE BNG A 204
05	AC5	SOFTWARE	SER A:77 , LEU A:78 , PHE A:82 , LEU A:86 , BNG A:204	BINDING SITE FOR RESIDUE BNG A 205
06	AC6	SOFTWARE	PG4 A:220	BINDING SITE FOR RESIDUE BNG A 206
07	AC7	SOFTWARE	GLY A:71 , HIS A:72 , ALA A:73 , TYR A:74	BINDING SITE FOR RESIDUE PEG A 207
08	AC8	SOFTWARE	VAL A:164 , ILE A:167	BINDING SITE FOR RESIDUE PEG A 209
09	AC9	SOFTWARE	LYS A:171	BINDING SITE FOR RESIDUE PEG A 210
10	BC1	SOFTWARE	LEU A:10 , THR A:54 , HOH A:319 , HOH A:341	BINDING SITE FOR RESIDUE PEG A 211
11	BC2	SOFTWARE	PHE A:22 , ILE A:23 , ILE A:69	BINDING SITE FOR RESIDUE PEG A 212
12	BC3	SOFTWARE	ILE A:168 , PEG A:214	BINDING SITE FOR RESIDUE PEG A 213
13	BC4	SOFTWARE	PEG A:213 , 1PE A:221	BINDING SITE FOR RESIDUE PEG A 214
14	BC5	SOFTWARE	ASN A:29 , THR A:30 , GLY A:33 , TRP A:34 , ILE A:36 , P6G A:224	BINDING SITE FOR RESIDUE PEG A 215
15	BC6	SOFTWARE	LYS A:172	BINDING SITE FOR RESIDUE PEG A 216
16	BC7	SOFTWARE	VAL A:87 , VAL A:90 , SER A:91 , ILE A:94 , LEU A:120	BINDING SITE FOR RESIDUE PG4 A 217
17	BC8	SOFTWARE	PG0 A:202	BINDING SITE FOR RESIDUE PG4 A 218
18	BC9	SOFTWARE	THR A:70 , GLY A:71 , BNG A:204	BINDING SITE FOR RESIDUE PG4 A 219
19	CC1	SOFTWARE	GLY A:140 , TRP A:141 , GLY A:142 , VAL A:144 , ALA A:145 , BNG A:206	BINDING SITE FOR RESIDUE PG4 A 220
20	CC2	SOFTWARE	ILE A:24 , PEG A:214	BINDING SITE FOR RESIDUE 1PE A 221
21	CC3	SOFTWARE	ILE A:94 , LEU A:97 , PHE A:98 , VAL A:116 , LEU A:120 , PG4 B:216	BINDING SITE FOR RESIDUE 1PE A 222
22	CC4	SOFTWARE	PRO A:28 , THR A:30	BINDING SITE FOR RESIDUE PGE A 223
23	CC5	SOFTWARE	TYR A:74 , PEG A:215	BINDING SITE FOR RESIDUE P6G A 224
24	CC6	SOFTWARE	TRP B:34 , GLU B:84 , TYR B:85 , HIS B:125 , GLY B:129 , TRP B:133 , TYR B:146 , ASN B:151 , HOH B:308 , HOH B:312	BINDING SITE FOR RESIDUE 2VY B 201
25	CC7	SOFTWARE	LEU B:78 , PHE B:82 , LEU B:86	BINDING SITE FOR RESIDUE PG0 B 202
26	CC8	SOFTWARE	VAL A:31 , LEU B:112 , BNG B:204 , PEG B:205	BINDING SITE FOR RESIDUE BNG B 203
27	CC9	SOFTWARE	LEU B:97 , PHE B:98 , ARG B:99 , PRO B:109 , VAL B:116 , BNG B:203 , PEG B:211 , HOH B:327 , HOH B:339	BINDING SITE FOR RESIDUE BNG B 204
28	DC1	SOFTWARE	BNG B:203 , PEG B:212	BINDING SITE FOR RESIDUE PEG B 205
29	DC2	SOFTWARE	PG4 B:220	BINDING SITE FOR RESIDUE PEG B 206
30	DC3	SOFTWARE	LEU A:112 , TRP B:138	BINDING SITE FOR RESIDUE PEG B 207
31	DC4	SOFTWARE	PEG B:215 , PG4 B:218	BINDING SITE FOR RESIDUE PEG B 209
32	DC5	SOFTWARE	SER B:91 , ILE B:94	BINDING SITE FOR RESIDUE PEG B 210
33	DC6	SOFTWARE	LEU B:119 , BNG B:204	BINDING SITE FOR RESIDUE PEG B 211
34	DC7	SOFTWARE	PEG B:205	BINDING SITE FOR RESIDUE PEG B 212
35	DC8	SOFTWARE	ILE B:24 , ILE B:39 , ILE B:42	BINDING SITE FOR RESIDUE PEG B 213
36	DC9	SOFTWARE	ASN B:7 , ARG B:9 , LEU B:10 , ARG B:51 , HIS B:179 , ASN B:181	BINDING SITE FOR RESIDUE PEG B 214
37	EC1	SOFTWARE	THR B:30 , GLY B:33 , PEG B:209 , PG4 B:218	BINDING SITE FOR RESIDUE PEG B 215
38	EC2	SOFTWARE	1PE A:222 , GLY B:140 , TRP B:141 , ALA B:145	BINDING SITE FOR RESIDUE PG4 B 216
39	EC3	SOFTWARE	ILE A:156 , LEU B:119 , TYR B:122 , PHE B:123	BINDING SITE FOR RESIDUE PG4 B 217
40	EC4	SOFTWARE	THR B:30 , GLY B:33 , TRP B:34 , ILE B:36 , TYR B:74 , PEG B:209 , PEG B:215 , HOH B:321	BINDING SITE FOR RESIDUE PG4 B 218
41	EC5	SOFTWARE	VAL B:116	BINDING SITE FOR RESIDUE PG4 B 219
42	EC6	SOFTWARE	THR B:30 , VAL B:31 , PEG B:206	BINDING SITE FOR RESIDUE PG4 B 220
43	EC7	SOFTWARE	MET B:68 , ILE B:69 , THR B:70 , GLY B:71	BINDING SITE FOR RESIDUE 1PE B 221
44	EC8	SOFTWARE	ALA B:15 , ALA B:19 , PHE B:22 , LEU B:66	BINDING SITE FOR RESIDUE P33 B 222

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh....eee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pop A   6 FNVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMITGHAYILSLSQAFLEYLVAPVSLGIAGLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPKLFIHSNY 182
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175

Chain B from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh...eee..ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pop B   7 NVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMITGHAYILSLSQAFLEYLVAPVSLGIAGLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPKLFIHSNY 182
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

Visualization

Interactive Views

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		1PE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		2VY	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		BNG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		P33	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		P6G	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PEG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PG0	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PG4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PGE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]
		BC9	[ RasMol ]	+environment [ RasMol ]
		CC1	[ RasMol ]	+environment [ RasMol ]
		CC2	[ RasMol ]	+environment [ RasMol ]
		CC3	[ RasMol ]	+environment [ RasMol ]
		CC4	[ RasMol ]	+environment [ RasMol ]
		CC5	[ RasMol ]	+environment [ RasMol ]
		CC6	[ RasMol ]	+environment [ RasMol ]
		CC7	[ RasMol ]	+environment [ RasMol ]
		CC8	[ RasMol ]	+environment [ RasMol ]
		CC9	[ RasMol ]	+environment [ RasMol ]
		DC1	[ RasMol ]	+environment [ RasMol ]
		DC2	[ RasMol ]	+environment [ RasMol ]
		DC3	[ RasMol ]	+environment [ RasMol ]
		DC4	[ RasMol ]	+environment [ RasMol ]
		DC5	[ RasMol ]	+environment [ RasMol ]
		DC6	[ RasMol ]	+environment [ RasMol ]
		DC7	[ RasMol ]	+environment [ RasMol ]
		DC8	[ RasMol ]	+environment [ RasMol ]
		DC9	[ RasMol ]	+environment [ RasMol ]
		EC1	[ RasMol ]	+environment [ RasMol ]
		EC2	[ RasMol ]	+environment [ RasMol ]
		EC3	[ RasMol ]	+environment [ RasMol ]
		EC4	[ RasMol ]	+environment [ RasMol ]
		EC5	[ RasMol ]	+environment [ RasMol ]
		EC6	[ RasMol ]	+environment [ RasMol ]
		EC7	[ RasMol ]	+environment [ RasMol ]
		EC8	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ala A:103 - Pro A:104	[ RasMol ]
		Ala B:103 - Pro B:104	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Still Images

Databases and Analysis Tools

Databases

Access by PDB/NDB ID
	4pop
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	THIT_LACLM \| A2RI47
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (9, 46)