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(-) Description

Title :  CRYSTAL STRUCTURE AT 2.0 A OF THE S-COMPONENT FOR THIAMIN FROM AN ECF-TYPE ABC TRANSPORTER
 
Authors :  G. B. Erkens, R. P. -A. Berntsson, F. Fulyani, M. Majsnerowska, A. Vujic J. Ter Beek, B. Poolman, D. J. Slotboom
Date :  19 Apr 11  (Deposition) - 29 Jun 11  (Release) - 20 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  S-Component, Ecf Transporter, Abc Transporter, Substrate-Binding Domain, Membrane, Thiamine-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. B. Erkens, R. P. Berntsson, F. Fulyani, M. Majsnerowska, J. Ter Beek, B. Poolman, D. J. Slotboom
The Structural Basis Of Modularity In Ecf-Type Abc Transporters.
Nat. Struct. Mol. Biol. V. 18 755 2011
PubMed-ID: 21706007  |  Reference-DOI: 10.1038/NSMB.2073

(-) Compounds

Molecule 1 - THIT
    Chains: A, B
    Engineered: YES
    Expression System: LACTOCOCCUS LACTIS SUBSP. CREMORIS
    Expression System Strain: NZ9000
    Expression System Taxid: 746361
    Gene: LLNZ_01755
    Organism Scientific: LACTOCOCCUS LACTIS SUBSP. CREMORIS
    Organism Taxid: 746361
    Strain: NZ9000

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric Unit (2, 13)
No.NameCountTypeFull Name
1BNG11Ligand/IonB-NONYLGLUCOSIDE
2VIB2Ligand/Ion3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1BNG7Ligand/IonB-NONYLGLUCOSIDE
2VIB1Ligand/Ion3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1BNG4Ligand/IonB-NONYLGLUCOSIDE
2VIB1Ligand/Ion3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE A:69 , BNG A:189BINDING SITE FOR RESIDUE BNG A 183
02AC2SOFTWAREALA A:145 , PHE B:115 , VAL B:116BINDING SITE FOR RESIDUE BNG A 184
03AC3SOFTWARELEU A:97 , PHE A:98 , PRO A:109 , VAL A:116BINDING SITE FOR RESIDUE BNG A 185
04AC4SOFTWAREBNG A:189BINDING SITE FOR RESIDUE BNG A 186
05AC5SOFTWARELEU A:119 , TYR A:122BINDING SITE FOR RESIDUE BNG A 187
06AC6SOFTWARELEU B:157BINDING SITE FOR RESIDUE BNG A 188
07AC7SOFTWAREPHE A:22 , ILE A:69 , BNG A:183 , BNG A:186BINDING SITE FOR RESIDUE BNG A 189
08AC8SOFTWARETRP A:34 , GLU A:84 , TYR A:85 , HIS A:125 , GLY A:129 , TRP A:133 , TYR A:146 , ASN A:151 , HOH A:196BINDING SITE FOR RESIDUE VIB A 191
09AC9SOFTWARETHR B:30BINDING SITE FOR RESIDUE BNG B 183
10BC1SOFTWARETYR B:32 , TRP B:138 , LYS B:139 , ALA B:149 , ILE B:153BINDING SITE FOR RESIDUE BNG B 184
11BC2SOFTWAREALA B:145BINDING SITE FOR RESIDUE BNG B 185
12BC3SOFTWAREILE B:65 , ALA B:73 , ILE B:75 , HOH B:206BINDING SITE FOR RESIDUE BNG B 186
13BC4SOFTWARETRP B:34 , ILE B:36 , GLU B:38 , GLU B:84 , TYR B:85 , HIS B:125 , GLY B:129 , TRP B:133 , TYR B:146 , ASN B:151 , HOH B:207BINDING SITE FOR RESIDUE VIB B 187

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RLB)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala A:103 -Pro A:104
2Ala B:103 -Pro B:104

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RLB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RLB)

(-) Exons   (0, 0)

(no "Exon" information available for 3RLB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh....eee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rlb A   7 NVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMITGHAYILSLSQAFLEYLVAPVSLGIAGLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPKLFIHSNY 182
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176      


Chain B from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh...eee..ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rlb B   6 FNVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMITGHAYILSLSQAFLEYLVAPVSLGIAGLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPKLFIHSNY 182
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RLB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RLB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3RLB)

(-) Gene Ontology  (0, 0)

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    Ala A:103 - Pro A:104   [ RasMol ]  
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