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4POP
Biol. Unit 2
Info
Asym.Unit (138 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (67 KB)
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(1)
Title
:
THIT WITH LMG139 BOUND
Authors
:
L. J. Y. M. Swier, A. Guskov, D. J. Slotboom
Date
:
26 Feb 14 (Deposition) - 17 Sep 14 (Release) - 01 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
S-Component, Thiamine-Binding Protein, Ecf Module, Membrane, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. J. Swier, L. Monjas, A. Guskov, A. R. De Voogd, G. B. Erkens, D. J. Slotboom, A. K. Hirsch
Structure-Based Design Of Potent Small-Molecule Binders To The S-Component Of The Ecf Transporter For Thiamine.
Chembiochem V. 16 819 2015
[
close entry info
]
Hetero Components
(7, 22)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
2a: 4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL... (2VYa)
2b: 4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL... (2VYb)
3a: B-NONYLGLUCOSIDE (BNGa)
3b: B-NONYLGLUCOSIDE (BNGb)
3c: B-NONYLGLUCOSIDE (BNGc)
3d: B-NONYLGLUCOSIDE (BNGd)
3e: B-NONYLGLUCOSIDE (BNGe)
4a: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33a)
5a: HEXAETHYLENE GLYCOL (P6Ga)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
6b: DI(HYDROXYETHYL)ETHER (PEGb)
6c: DI(HYDROXYETHYL)ETHER (PEGc)
6d: DI(HYDROXYETHYL)ETHER (PEGd)
6e: DI(HYDROXYETHYL)ETHER (PEGe)
6f: DI(HYDROXYETHYL)ETHER (PEGf)
6g: DI(HYDROXYETHYL)ETHER (PEGg)
6h: DI(HYDROXYETHYL)ETHER (PEGh)
6i: DI(HYDROXYETHYL)ETHER (PEGi)
6j: DI(HYDROXYETHYL)ETHER (PEGj)
6k: DI(HYDROXYETHYL)ETHER (PEGk)
6l: DI(HYDROXYETHYL)ETHER (PEGl)
6m: DI(HYDROXYETHYL)ETHER (PEGm)
6n: DI(HYDROXYETHYL)ETHER (PEGn)
6o: DI(HYDROXYETHYL)ETHER (PEGo)
6p: DI(HYDROXYETHYL)ETHER (PEGp)
6q: DI(HYDROXYETHYL)ETHER (PEGq)
6r: DI(HYDROXYETHYL)ETHER (PEGr)
6s: DI(HYDROXYETHYL)ETHER (PEGs)
6t: DI(HYDROXYETHYL)ETHER (PEGt)
6u: DI(HYDROXYETHYL)ETHER (PEGu)
7a: 2-(2-METHOXYETHOXY)ETHANOL (PG0a)
7b: 2-(2-METHOXYETHOXY)ETHANOL (PG0b)
7c: 2-(2-METHOXYETHOXY)ETHANOL (PG0c)
8a: TETRAETHYLENE GLYCOL (PG4a)
8b: TETRAETHYLENE GLYCOL (PG4b)
8c: TETRAETHYLENE GLYCOL (PG4c)
8d: TETRAETHYLENE GLYCOL (PG4d)
8e: TETRAETHYLENE GLYCOL (PG4e)
8f: TETRAETHYLENE GLYCOL (PG4f)
8g: TETRAETHYLENE GLYCOL (PG4g)
8h: TETRAETHYLENE GLYCOL (PG4h)
8i: TETRAETHYLENE GLYCOL (PG4i)
9a: TRIETHYLENE GLYCOL (PGEa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
2VY
1
Ligand/Ion
4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-METHYLTHIOPHENE-2-CARBALDEHYDE
3
BNG
2
Ligand/Ion
B-NONYLGLUCOSIDE
4
P33
1
Ligand/Ion
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
5
P6G
-1
Ligand/Ion
HEXAETHYLENE GLYCOL
6
PEG
11
Ligand/Ion
DI(HYDROXYETHYL)ETHER
7
PG0
1
Ligand/Ion
2-(2-METHOXYETHOXY)ETHANOL
8
PG4
5
Ligand/Ion
TETRAETHYLENE GLYCOL
9
PGE
-1
Ligand/Ion
TRIETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: CC3 (SOFTWARE)
02: CC6 (SOFTWARE)
03: CC7 (SOFTWARE)
04: CC8 (SOFTWARE)
05: CC9 (SOFTWARE)
06: DC1 (SOFTWARE)
07: DC2 (SOFTWARE)
08: DC3 (SOFTWARE)
09: DC4 (SOFTWARE)
10: DC5 (SOFTWARE)
11: DC6 (SOFTWARE)
12: DC7 (SOFTWARE)
13: DC8 (SOFTWARE)
14: DC9 (SOFTWARE)
15: EC1 (SOFTWARE)
16: EC2 (SOFTWARE)
17: EC3 (SOFTWARE)
18: EC4 (SOFTWARE)
19: EC5 (SOFTWARE)
20: EC6 (SOFTWARE)
21: EC7 (SOFTWARE)
22: EC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC3
SOFTWARE
ILE A:94 , LEU A:97 , PHE A:98 , VAL A:116 , LEU A:120 , PG4 B:216
BINDING SITE FOR RESIDUE 1PE A 222
02
CC6
SOFTWARE
TRP B:34 , GLU B:84 , TYR B:85 , HIS B:125 , GLY B:129 , TRP B:133 , TYR B:146 , ASN B:151 , HOH B:308 , HOH B:312
BINDING SITE FOR RESIDUE 2VY B 201
03
CC7
SOFTWARE
LEU B:78 , PHE B:82 , LEU B:86
BINDING SITE FOR RESIDUE PG0 B 202
04
CC8
SOFTWARE
VAL A:31 , LEU B:112 , BNG B:204 , PEG B:205
BINDING SITE FOR RESIDUE BNG B 203
05
CC9
SOFTWARE
LEU B:97 , PHE B:98 , ARG B:99 , PRO B:109 , VAL B:116 , BNG B:203 , PEG B:211 , HOH B:327 , HOH B:339
BINDING SITE FOR RESIDUE BNG B 204
06
DC1
SOFTWARE
BNG B:203 , PEG B:212
BINDING SITE FOR RESIDUE PEG B 205
07
DC2
SOFTWARE
PG4 B:220
BINDING SITE FOR RESIDUE PEG B 206
08
DC3
SOFTWARE
LEU A:112 , TRP B:138
BINDING SITE FOR RESIDUE PEG B 207
09
DC4
SOFTWARE
PEG B:215 , PG4 B:218
BINDING SITE FOR RESIDUE PEG B 209
10
DC5
SOFTWARE
SER B:91 , ILE B:94
BINDING SITE FOR RESIDUE PEG B 210
11
DC6
SOFTWARE
LEU B:119 , BNG B:204
BINDING SITE FOR RESIDUE PEG B 211
12
DC7
SOFTWARE
PEG B:205
BINDING SITE FOR RESIDUE PEG B 212
13
DC8
SOFTWARE
ILE B:24 , ILE B:39 , ILE B:42
BINDING SITE FOR RESIDUE PEG B 213
14
DC9
SOFTWARE
ASN B:7 , ARG B:9 , LEU B:10 , ARG B:51 , HIS B:179 , ASN B:181
BINDING SITE FOR RESIDUE PEG B 214
15
EC1
SOFTWARE
THR B:30 , GLY B:33 , PEG B:209 , PG4 B:218
BINDING SITE FOR RESIDUE PEG B 215
16
EC2
SOFTWARE
1PE A:222 , GLY B:140 , TRP B:141 , ALA B:145
BINDING SITE FOR RESIDUE PG4 B 216
17
EC3
SOFTWARE
ILE A:156 , LEU B:119 , TYR B:122 , PHE B:123
BINDING SITE FOR RESIDUE PG4 B 217
18
EC4
SOFTWARE
THR B:30 , GLY B:33 , TRP B:34 , ILE B:36 , TYR B:74 , PEG B:209 , PEG B:215 , HOH B:321
BINDING SITE FOR RESIDUE PG4 B 218
19
EC5
SOFTWARE
VAL B:116
BINDING SITE FOR RESIDUE PG4 B 219
20
EC6
SOFTWARE
THR B:30 , VAL B:31 , PEG B:206
BINDING SITE FOR RESIDUE PG4 B 220
21
EC7
SOFTWARE
MET B:68 , ILE B:69 , THR B:70 , GLY B:71
BINDING SITE FOR RESIDUE 1PE B 221
22
EC8
SOFTWARE
ALA B:15 , ALA B:19 , PHE B:22 , LEU B:66
BINDING SITE FOR RESIDUE P33 B 222
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (138 KB)
Header - Asym.Unit
Biol.Unit 1 (68 KB)
Header - Biol.Unit 1
Biol.Unit 2 (67 KB)
Header - Biol.Unit 2
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