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(-) Description

Title :  STRUCTURE OF THE FREE FORM OF THE N-TERMINAL VH1 DOMAIN OF MONOMERIC ALPHA-CATENIN
 
Authors :  T. Shibahara, Y. Hirano, T. Hakoshima
Date :  04 Apr 14  (Deposition) - 29 Apr 15  (Release) - 15 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  C  (1x)
Biol. Unit 2:  A  (1x)
Biol. Unit 3:  B  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Cytoskeletal Protein, Adherens Junction, Helix Bundle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Shibahara, Y. Hirano, T. Hakoshima
Structure Of The Free Form Of The N-Terminal Vh1 Domain Of Monomeric Alpha-Catenin.
Febs Lett. V. 589 1754 2015
PubMed-ID: 26071377  |  Reference-DOI: 10.1016/J.FEBSLET.2015.05.053

(-) Compounds

Molecule 1 - CATENIN ALPHA-2
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-47B
    Expression System Strain: BL21 STAR (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 13-261
    Gene: CTNNA2, CATNA2
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: ALPHA N-CATENIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x):   C 
Biological Unit 2 (1x): A   
Biological Unit 3 (1x):  B  
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 34)

Asymmetric Unit (3, 34)
No.NameCountTypeFull Name
1EDO12Ligand/Ion1,2-ETHANEDIOL
2IOD20Ligand/IonIODIDE ION
3PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (3, 9)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2IOD5Ligand/IonIODIDE ION
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (3, 9)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2IOD5Ligand/IonIODIDE ION
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 3 (2, 8)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2IOD5Ligand/IonIODIDE ION
3PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 4 (2, 8)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2IOD5Ligand/IonIODIDE ION
3PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREEDO A:308 , THR B:222binding site for residue IOD A 301
02AC2SOFTWAREMET A:183 , ARG A:210binding site for residue IOD A 302
03AC3SOFTWARELYS A:214 , LYS B:215binding site for residue IOD A 304
04AC4SOFTWAREGLN A:194 , GLN A:195 , ARG A:203binding site for residue EDO A 306
05AC5SOFTWAREALA A:226 , LYS B:185 , VAL C:233 , ALA C:234 , ALA C:235binding site for residue EDO A 307
06AC6SOFTWAREVAL A:184 , ASN A:187 , IOD A:301 , MET B:219 , THR B:222 , ALA B:223 , ASN B:239binding site for residue EDO A 308
07AC7SOFTWAREGLY A:211 , GLY B:211binding site for residue PEG A 309
08AC8SOFTWARETHR A:222 , EDO B:308binding site for residue IOD B 301
09AC9SOFTWAREMET B:183 , ARG B:210binding site for residue IOD B 302
10AD1SOFTWARELYS A:215 , LYS B:214binding site for residue IOD B 304
11AD2SOFTWAREALA B:250binding site for residue IOD B 305
12AD3SOFTWAREGLN B:194 , GLN B:195 , ARG B:203binding site for residue EDO B 306
13AD4SOFTWAREVAL A:184 , LYS A:185 , ALA B:226 , VAL D:233 , ALA D:234 , ALA D:235binding site for residue EDO B 307
14AD5SOFTWAREMET A:219 , THR A:222 , ALA A:223 , ASN A:239 , VAL B:184 , ASN B:187 , IOD B:301binding site for residue EDO B 308
15AD6SOFTWAREEDO C:308 , THR D:222binding site for residue IOD C 301
16AD7SOFTWAREMET C:183 , ARG C:210binding site for residue IOD C 302
17AD8SOFTWARELYS C:214 , LYS D:215binding site for residue IOD C 304
18AD9SOFTWAREALA C:250binding site for residue IOD C 305
19AE1SOFTWAREGLN C:194 , GLN C:195 , ARG C:203binding site for residue EDO C 306
20AE2SOFTWAREVAL A:233 , ALA A:234 , ALA A:235 , ALA C:226 , VAL D:184 , LYS D:185binding site for residue EDO C 307
21AE3SOFTWAREVAL C:184 , IOD C:301 , MET D:219 , THR D:222 , ALA D:223 , ASN D:239 , HOH D:401binding site for residue EDO C 308
22AE4SOFTWAREGLY C:211 , LYS C:215 , GLY D:211 , LYS D:215binding site for residue PEG C 309
23AE5SOFTWARETHR C:222 , EDO D:308binding site for residue IOD D 301
24AE6SOFTWAREMET D:183 , ARG D:210binding site for residue IOD D 302
25AE7SOFTWARELYS C:215 , LYS D:214binding site for residue IOD D 304
26AE8SOFTWAREALA D:250binding site for residue IOD D 305
27AE9SOFTWAREGLN D:194 , GLN D:195 , ARG D:203binding site for residue EDO D 306
28AF1SOFTWAREVAL B:233 , ALA B:234 , ALA B:235 , LYS C:185 , ALA D:226binding site for residue EDO D 307
29AF2SOFTWAREMET C:219 , THR C:222 , ALA C:223 , ASN C:239 , VAL D:184 , IOD D:301binding site for residue EDO D 308

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4P9T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4P9T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4P9T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4P9T)

(-) Exons   (0, 0)

(no "Exon" information available for 4P9T)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:231
                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p9t A  18 EIRTLTVERLLEPLVTQVTTLVNTSKKAHVLAASVEQATQNFLEKGEQIAKESQDLKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLLILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKKNATMLYTASQAFLRHPDVAATRANRDYVFKQVQEAIAGISSAAQA 260
                                    27        37   ||   59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259 
                                                  41|                                                                                                                                                                                                              
                                                   54                                                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:231
                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p9t B  18 EIRTLTVERLLEPLVTQVTTLVNTSKKAHVLAASVEQATQNFLEKGEQIAKESQDLKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLLILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKKNATMLYTASQAFLRHPDVAATRANRDYVFKQVQEAIAGISSAAQA 260
                                    27        37   ||   59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259 
                                                  41|                                                                                                                                                                                                              
                                                   54                                                                                                                                                                                                              


Chain C from PDB  Type:PROTEIN  Length:231
                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p9t C  18 EIRTLTVERLLEPLVTQVTTLVNTSKKAHVLAASVEQATQNFLEKGEQIAKESQDLKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLLILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKKNATMLYTASQAFLRHPDVAATRANRDYVFKQVQEAIAGISSAAQA 260
                                    27        37   ||   59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259 
                                                  41|                                                                                                                                                                                                              
                                                   54                                                                                                                                                                                                              


Chain D from PDB  Type:PROTEIN  Length:231
                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p9t D  18 EIRTLTVERLLEPLVTQVTTLVNTSKKAHVLAASVEQATQNFLEKGEQIAKESQDLKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLLILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKKNATMLYTASQAFLRHPDVAATRANRDYVFKQVQEAIAGISSAAQA 260
                                    27        37   ||   59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259 
                                                  41|                                                                                                                                                                                                              
                                                   54
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4P9T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4P9T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4P9T)

(-) Gene Ontology  (26, 26)

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        CTNA2_MOUSE | Q61301: 4k1o 4ons

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