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4P9T
Asym. Unit
Info
Asym.Unit (143 KB)
Biol.Unit 1 (36 KB)
Biol.Unit 2 (36 KB)
Biol.Unit 3 (36 KB)
Biol.Unit 4 (36 KB)
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(1)
Title
:
STRUCTURE OF THE FREE FORM OF THE N-TERMINAL VH1 DOMAIN OF MONOMERIC ALPHA-CATENIN
Authors
:
T. Shibahara, Y. Hirano, T. Hakoshima
Date
:
04 Apr 14 (Deposition) - 29 Apr 15 (Release) - 15 Jul 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: C (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Biol. Unit 4: D (1x)
Keywords
:
Cytoskeletal Protein, Adherens Junction, Helix Bundle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Shibahara, Y. Hirano, T. Hakoshima
Structure Of The Free Form Of The N-Terminal Vh1 Domain Of Monomeric Alpha-Catenin.
Febs Lett. V. 589 1754 2015
[
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Hetero Components
(3, 34)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
2a: IODIDE ION (IODa)
2b: IODIDE ION (IODb)
2c: IODIDE ION (IODc)
2d: IODIDE ION (IODd)
2e: IODIDE ION (IODe)
2f: IODIDE ION (IODf)
2g: IODIDE ION (IODg)
2h: IODIDE ION (IODh)
2i: IODIDE ION (IODi)
2j: IODIDE ION (IODj)
2k: IODIDE ION (IODk)
2l: IODIDE ION (IODl)
2m: IODIDE ION (IODm)
2n: IODIDE ION (IODn)
2o: IODIDE ION (IODo)
2p: IODIDE ION (IODp)
2q: IODIDE ION (IODq)
2r: IODIDE ION (IODr)
2s: IODIDE ION (IODs)
2t: IODIDE ION (IODt)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
2
IOD
20
Ligand/Ion
IODIDE ION
3
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
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Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
EDO A:308 , THR B:222
binding site for residue IOD A 301
02
AC2
SOFTWARE
MET A:183 , ARG A:210
binding site for residue IOD A 302
03
AC3
SOFTWARE
LYS A:214 , LYS B:215
binding site for residue IOD A 304
04
AC4
SOFTWARE
GLN A:194 , GLN A:195 , ARG A:203
binding site for residue EDO A 306
05
AC5
SOFTWARE
ALA A:226 , LYS B:185 , VAL C:233 , ALA C:234 , ALA C:235
binding site for residue EDO A 307
06
AC6
SOFTWARE
VAL A:184 , ASN A:187 , IOD A:301 , MET B:219 , THR B:222 , ALA B:223 , ASN B:239
binding site for residue EDO A 308
07
AC7
SOFTWARE
GLY A:211 , GLY B:211
binding site for residue PEG A 309
08
AC8
SOFTWARE
THR A:222 , EDO B:308
binding site for residue IOD B 301
09
AC9
SOFTWARE
MET B:183 , ARG B:210
binding site for residue IOD B 302
10
AD1
SOFTWARE
LYS A:215 , LYS B:214
binding site for residue IOD B 304
11
AD2
SOFTWARE
ALA B:250
binding site for residue IOD B 305
12
AD3
SOFTWARE
GLN B:194 , GLN B:195 , ARG B:203
binding site for residue EDO B 306
13
AD4
SOFTWARE
VAL A:184 , LYS A:185 , ALA B:226 , VAL D:233 , ALA D:234 , ALA D:235
binding site for residue EDO B 307
14
AD5
SOFTWARE
MET A:219 , THR A:222 , ALA A:223 , ASN A:239 , VAL B:184 , ASN B:187 , IOD B:301
binding site for residue EDO B 308
15
AD6
SOFTWARE
EDO C:308 , THR D:222
binding site for residue IOD C 301
16
AD7
SOFTWARE
MET C:183 , ARG C:210
binding site for residue IOD C 302
17
AD8
SOFTWARE
LYS C:214 , LYS D:215
binding site for residue IOD C 304
18
AD9
SOFTWARE
ALA C:250
binding site for residue IOD C 305
19
AE1
SOFTWARE
GLN C:194 , GLN C:195 , ARG C:203
binding site for residue EDO C 306
20
AE2
SOFTWARE
VAL A:233 , ALA A:234 , ALA A:235 , ALA C:226 , VAL D:184 , LYS D:185
binding site for residue EDO C 307
21
AE3
SOFTWARE
VAL C:184 , IOD C:301 , MET D:219 , THR D:222 , ALA D:223 , ASN D:239 , HOH D:401
binding site for residue EDO C 308
22
AE4
SOFTWARE
GLY C:211 , LYS C:215 , GLY D:211 , LYS D:215
binding site for residue PEG C 309
23
AE5
SOFTWARE
THR C:222 , EDO D:308
binding site for residue IOD D 301
24
AE6
SOFTWARE
MET D:183 , ARG D:210
binding site for residue IOD D 302
25
AE7
SOFTWARE
LYS C:215 , LYS D:214
binding site for residue IOD D 304
26
AE8
SOFTWARE
ALA D:250
binding site for residue IOD D 305
27
AE9
SOFTWARE
GLN D:194 , GLN D:195 , ARG D:203
binding site for residue EDO D 306
28
AF1
SOFTWARE
VAL B:233 , ALA B:234 , ALA B:235 , LYS C:185 , ALA D:226
binding site for residue EDO D 307
29
AF2
SOFTWARE
MET C:219 , THR C:222 , ALA C:223 , ASN C:239 , VAL D:184 , IOD D:301
binding site for residue EDO D 308
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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Show PDB file:
Asym.Unit (143 KB)
Header - Asym.Unit
Biol.Unit 1 (36 KB)
Header - Biol.Unit 1
Biol.Unit 2 (36 KB)
Header - Biol.Unit 2
Biol.Unit 3 (36 KB)
Header - Biol.Unit 3
Biol.Unit 4 (36 KB)
Header - Biol.Unit 4
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