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(-) Description

Title :  STRUCTURE OF MEMBRANE BINDING PROTEIN PLEUROTOLYSIN B FROM PLEUROTUS OSTREATUS
 
Authors :  M. A. Dunstone, T. T. Caradoc-Davies, J. C. Whisstock, R. H. P. Law
Date :  13 Jan 14  (Deposition) - 18 Feb 15  (Release) - 18 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Macpf Domain, Pore Formation, Pleurotolysin A, Membrane Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Lukoyanova, S. C. Kondos, I. Farabella, R. H. Law, C. F. Reboul, T. T. Caradoc-Davies, B. A. Spicer, O. Kleifeld, D. A. Traore, S. M. Ekkel, I. Voskoboinik, J. A. Trapani, T. Hatfaludi, K. Oliver, E. M. Hotze, R. K. Tweten, J. C. Whisstock, M. Topf, H. R. Saibil, M. A. Dunstone
Conformational Changes During Pore Formation By The Perforin-Related Protein Pleurotolysin.
Plos Biol. V. 13 02049 2015
PubMed-ID: 25654333  |  Reference-DOI: 10.1371/JOURNAL.PBIO.1002049

(-) Compounds

Molecule 1 - PLEUROTOLYSIN B
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PLYB
    Organism Common: OYSTER MUSHROOM
    Organism Scientific: PLEUROTUS OSTREATUS
    Organism Taxid: 5322

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2CL1Ligand/IonCHLORIDE ION
3GOL4Ligand/IonGLYCEROL
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1ACT8Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3GOL8Ligand/IonGLYCEROL

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:395 , PRO A:396 , LEU A:398BINDING SITE FOR RESIDUE ACT A 601
2AC2SOFTWARETRP A:381 , LEU A:382 , GLY A:383 , ALA A:391 , LEU A:392 , HOH A:771BINDING SITE FOR RESIDUE GOL A 602
3AC3SOFTWAREILE A:109 , GLU A:110 , THR A:111 , LYS A:255 , GLU A:259 , GOL A:608 , HOH A:803BINDING SITE FOR RESIDUE GOL A 603
4AC4SOFTWAREPHE A:380 , ARG A:449BINDING SITE FOR RESIDUE ACT A 604
5AC5SOFTWAREGLU A:124 , ASN A:289BINDING SITE FOR RESIDUE ACT A 605
6AC6SOFTWAREGLU A:117 , THR A:140 , PRO A:453 , ASP A:454 , VAL A:456 , LEU A:457 , LYS A:512BINDING SITE FOR RESIDUE GOL A 606
7AC7SOFTWARESER A:125 , ASN A:295 , HOH A:853BINDING SITE FOR RESIDUE ACT A 607
8AC8SOFTWARETHR A:111 , THR A:112 , ASN A:128 , SER A:129 , ALA A:130 , ARG A:165 , GOL A:603BINDING SITE FOR RESIDUE GOL A 608
9AC9SOFTWAREGLY A:414 , SER A:415BINDING SITE FOR RESIDUE CL A 609

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OEJ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:373 -Ala A:374
2Pro A:443 -Pro A:444

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OEJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OEJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4OEJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:464
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh.hhhhhhhhhh.....eeee..eeee............eeee....eeeeeee....hhhhhh...hhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeeeee.............hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.eeeeeeeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh.........eeeeee.....eeeeeeeee..hhhhh.hhhhhhhhhhhhhhheeeeeeeeee.hhhhhhhhhhhhhhhh..eeeeee.eee...........eee...................eeeeee...........ee.eee.......eee....................hhhhh.ee....eee.eeeee.......eeeee...............eeee.............eee....eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oej A  55 LNDVIQDPTRRNKLINDNNLLKGIIMGRDGPVPSSRELIVRPDTLRAIINNRATIETTTMEAEFTETLMESNYNSASVKVSAPFITANSEYSESSSFKNTETEKSMYTSSRYLFPQGRIDFTTPDSGFDVIKLSPQFTSGVQAALAKATGTEKREALQNLFQEYGHVFRTKVHIGGVLSAHTMETFSRSENETEVKQDVKAGLEGAVKGWGGGATAGHGNTQGTITTSQNRKLNVKYIVNGGDYTKIQNTEEWVASTNQSEHWRVIEVTEVTAVADLLPQPIRGQVKDLLKPLLGKWVDVEKVPGLESLPVSVYRPKGAIPAGWFWLGDTADASKALLVKPTLPARSGRNPALTSLHQGSGMTEQPFVDLPQYQYLSTYFGSFAHDTPPGSTLRGLRPDHVLPGRYEMHGDTISTAVYVTRPVDVPFPEDECFDLKSLVRVKLPGSGNPPKPRSALKKSMVLFD 519
                                    64        74        84        94       104       114       124       134       144       154       164       174       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515    
                                                                                                                                                         182|                                                                                                                                                                                                                                                                                                                                               
                                                                                                                                                          184
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OEJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OEJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OEJ)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4OEJ)

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        Q5W9E8_PLEOS | Q5W9E8: 4ov8 4v2t 4v3a 4v3m 4v3n

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4oeb