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(-) Description

Title :  MEMBRANE BOUND PLEUROTOLYSIN PREPORE (TMH1 LOCK) TRAPPED WITH ENGINEERED DISULPHIDE CROSS-LINK
 
Authors :  N. Lukoyanova, S. C. Kondos, I. Farabella, R. H. P. Law, C. F. Reboul, T. T. Caradocdavies, B. A. Spicer, O. Kleifeld, M. Perugini, S. Ekkel, T. Hatfaludi, K. Oliver, E. M. Hotze, R. K. Tweten, J. C. Whisstock, M. T M. A. Dunstone, H. R. Saibil
Date :  17 Oct 14  (Deposition) - 18 Feb 15  (Release) - 18 Feb 15  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  15.00
Chains :  Asym. Unit :  A,B,C  (20x)
Biol. Unit 1:  A,B,C  (1x)
Keywords :  Transport Protein, Macpf/Cdc Superfamily, Pore-Forming Proteins (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Lukoyanova, S. C. Kondos, I. Farabella, R. H. P. Law, C. F. Reboul, T. T. Caradoc-Davies, B. A. Spicer, O. Kleifeld, D. A. K. Traore, S. M. Ekkel, I. Voskoboinik, J. A. Trapani, T. Hatfaludi, K. Oliver, E. M. Hotze, R. K. Tweten, J. C. Whisstock, M. Topf, H. R. Saibil, M. A. Dunstone
Conformational Changes During Pore Formation By The Perforin-Related Protein Pleurotolysin.
Plos Biol. V. 13 02049 2015
PubMed-ID: 25654333  |  Reference-DOI: 10.1371/JOURNAL.PBIO.1002049

(-) Compounds

Molecule 1 - PLEUROTOLYSIN A
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: CODON PLUS PLYSS (NOVAGEN)
    Expression System Vector Type: PLASMID
    Organism Common: OYSTER MUSHROOM
    Organism Scientific: PLEUROTUS OSTREATUS
    Organism Taxid: 5322
 
Molecule 2 - PLEUROTOLYSIN B
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PUC57, PET3A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: CODON PLUS PLYSS (NOVAGEN)
    Expression System Vector Type: PLASMID
    Organism Common: OYSTER MUSHROOM
    Organism Scientific: PLEUROTUS OSTREATUS
    Organism Taxid: 5322

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit (20x): ABC
Biological Unit 1 (1x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4V3A)

(-) Sites  (0, 0)

(no "Site" information available for 4V3A)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4V3A)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4V3A)

(-) Sequences/Alignments

Asymmetric Unit
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Chain A from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................................................................................................................................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4v3a A   1 AYAQWVIIIIHNVGSKDVKIKNLKPSWGKLHADGDKDTEVSASKYEGTVIKPDEKLQINACGRSDAAEGTTGTFDLVDPADGDKQVRHFYWDCPWGSKTNTWTVSGSNTKWMIEYSGQNLDSGALGTITVDTLKK 135
                                    10        20        30        40        50        60        70        80        90       100       110       120       130     


Chain B from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................................................................................................................................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4v3a B   1 AYAQWVIIIIHNVGSKDVKIKNLKPSWGKLHADGDKDTEVSASKYEGTVIKPDEKLQINACGRSDAAEGTTGTFDLVDPADGDKQVRHFYWDCPWGSKTNTWTVSGSNTKWMIEYSGQNLDSGALGTITVDTLKK 135
                                    10        20        30        40        50        60        70        80        90       100       110       120       130     


Chain C from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................................................................................................................................................................................................................................................................................................................................................................................................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4v3a C   1 SQAGDTLNDVIQDPTRRNKLINDNNLLKGIIMGRDGPVPSSRELIVRPDTLRAIINNRATIETTTMKSMYTSSRYLFPQGRIDFTTPDSGFDDVIKLSPQFTSGVQAALAKATGTEKREALQNLFQEYGHVFRTKVHIGGVLSAHTMETFSKLNVKYIVNGGDYTKIQNTEEWVASTNQSEHWRVIEVTEVTAVADLLPQPIRGQVKDLLKPLLGKWVDVEKVPGLESLPVSVYRPKGAIPAGWFWLGDTADASKALLVKPTLPARSGRNPALTSLHQGSGMTEQPFVDLPQYQYLSTYFGSFAHDTPPGSTLRGLRPDHVLPGRYEMHGDTISTAVYVTRPVDVPFPEDECFDLKSLVRVKLPGSGNPPKPRSALKKSMVLFDSGEK 475
                                    10        20        30        40        50        60     ||113       123       133       143       153       163       173       183       193||     247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467        
                                                                                            66|                                                                                 194|                                                                                                                                                                                                                                            
                                                                                            110                                                                                  239
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4V3A)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (1, 1)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5W9E8_PLEOS | Q5W9E8: 4oej 4ov8 4v2t 4v3m 4v3n
        Q8X1M9_PLEOS | Q8X1M9: 4oeb 4v2t 4v3m 4v3n

(-) Related Entries Specified in the PDB File

4v2t MEMBRANE EMBEDDED PLEUROTOLYSIN PORE WITH 13 FOLD SYMMETRY
4v3m MEMBRANE BOUND PLEUROTOLYSIN PREPORE (TMH2 HELIX LOCK) TRAPPED WITH ENGINEERED DISULPHIDE CROSS-LINK
4v3n MEMBRANE BOUND PLEUROTOLYSIN PREPORE (TMH2 STRAND LOCK) TRAPPED WITH ENGINEERED DISULPHIDE CROSS-LINK RELATED ID: EMD-2794 RELATED DB: EMDB