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(-) Description

Title :  STRUCTURE OF MEMBRANE BINDING PROTEIN PLEUROTOLYSIN A FROM PLEUROTUS OSTREATUS
 
Authors :  M. A. Dunstone, T. T. Caradoc-Davies, J. C. Whisstock, R. H. P. Law
Date :  12 Jan 14  (Deposition) - 18 Feb 15  (Release) - 18 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Beta-Sandwich Fold, Pleurotolysin B, Membrane Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Lukoyanova, S. C. Kondos, I. Farabella, R. H. Law, C. F. Reboul, T. T. Caradoc-Davies, B. A. Spicer, O. Kleifeld, D. A. Traore, S. M. Ekkel, I. Voskoboinik, J. A. Trapani, T. Hatfaludi, K. Oliver, E. M. Hotze, R. K. Tweten, J. C. Whisstock, M. Topf, H. R. Saibil, M. A. Dunstone
Conformational Changes During Pore Formation By The Perforin-Related Protein Pleurotolysin.
Plos Biol. V. 13 02049 2015
PubMed-ID: 25654333  |  Reference-DOI: 10.1371/JOURNAL.PBIO.1002049

(-) Compounds

Molecule 1 - PLEUROTOLYSIN A
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PLYA, PLYA
    Organism Common: OYSTER MUSHROOM
    Organism Scientific: PLEUROTUS OSTREATUS
    Organism Taxid: 5322
    Synonym: PRIA

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2SO44Ligand/IonSULFATE ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1MSE1Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1MSE1Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1MSE1Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
1MSE1Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:30 , ARG A:64 , SER A:65BINDING SITE FOR RESIDUE SO4 A 201
2AC2SOFTWARELYS B:30 , ARG B:64 , SER B:65 , HOH B:394BINDING SITE FOR RESIDUE SO4 B 201
3AC3SOFTWARELYS C:30 , ARG C:64 , SER C:65 , ASP C:66BINDING SITE FOR RESIDUE SO4 C 201
4AC4SOFTWARELYS D:30 , ARG D:64 , SER D:65 , ASP D:66 , HOH D:358BINDING SITE FOR RESIDUE SO4 D 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OEB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OEB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OEB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OEB)

(-) Exons   (0, 0)

(no "Exon" information available for 4OEB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee.....eeeeeeeeee.eeee..eeeeeehhhhh...ee....eeeeeee........eeeeeeee.......eeeeeeeee.......eeeee.....eeeeeeee.......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oeb A   2 AYAQWVIIIIHNVGSKDVKIKNLKPSWGKLHADGDKDTEVSASKYEGTVIKPDEKLQINACGRSDAAEGTTGTFDLVDPADGDKQVRHFYWDCPWGSKTNTWTVSGSNTKWmIEYSGQNLDSGALGTITVDTLKK 136
                                    11        21        31        41        51        61        71        81        91       101       111 |     121       131     
                                                                                                                                         113-MSE                   


Chain B from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee.....eeeeeeeeee.eeee..eeeeeehhhhh...ee....eeeeeee........eeeeeeee.......eeeeeeeee.......eeeee.....eeeeee.........eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oeb B   2 AYAQWVIIIIHNVGSKDVKIKNLKPSWGKLHADGDKDTEVSASKYEGTVIKPDEKLQINACGRSDAAEGTTGTFDLVDPADGDKQVRHFYWDCPWGSKTNTWTVSGSNTKWmIEYSGQNLDSGALGTITVDTLKK 136
                                    11        21        31        41        51        61        71        81        91       101       111 |     121       131     
                                                                                                                                         113-MSE                   


Chain C from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee.....eeeeeeeeee.eeee..eeeeeehhhhh...ee....eeeeeee........eeeeeeee.hhhh..eeeeeeeee.......eeeee.....eeeeee.........eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oeb C   2 AYAQWVIIIIHNVGSKDVKIKNLKPSWGKLHADGDKDTEVSASKYEGTVIKPDEKLQINACGRSDAAEGTTGTFDLVDPADGDKQVRHFYWDCPWGSKTNTWTVSGSNTKWmIEYSGQNLDSGALGTITVDTLKK 136
                                    11        21        31        41        51        61        71        81        91       101       111 |     121       131     
                                                                                                                                         113-MSE                   


Chain D from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee.....eeeeeeeeee.eeee..eeeeeehhhhh...ee....eeeeeee........eeeeeeee.hhhh..eeeeeeeee.......eeeee.....eeeeee.........eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oeb D   2 AYAQWVIIIIHNVGSKDVKIKNLKPSWGKLHADGDKDTEVSASKYEGTVIKPDEKLQINACGRSDAAEGTTGTFDLVDPADGDKQVRHFYWDCPWGSKTNTWTVSGSNTKWmIEYSGQNLDSGALGTITVDTLKK 136
                                    11        21        31        41        51        61        71        81        91       101       111 |     121       131     
                                                                                                                                         113-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OEB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OEB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OEB)

(-) Gene Ontology  (1, 1)

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        Q8X1M9_PLEOS | Q8X1M9: 4v2t 4v3a 4v3m 4v3n

(-) Related Entries Specified in the PDB File

4oej