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(-) Description

Title :  COMPUTATIONALLY DESIGNED TWO-COMPONENT SELF-ASSEMBLING TETRAHEDRAL CAGE T33-15
 
Authors :  D. E. Mcnamara, N. P. King, J. B. Bale, W. Sheffler, D. Baker, T. O. Yeates
Date :  06 Dec 13  (Deposition) - 28 May 14  (Release) - 28 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (12x)
Keywords :  Two-Component, Self-Assembling, Tetrahedron, Designed Protein Cage, Computational Design, Protein Engineering, Multimerization, Nanomaterial, Nanostructure, Molybdenum Cofactor Biosynthesis Protein, Mog, Chorismate Mutase, Isomerase, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  N. P. King, J. B. Bale, W. Sheffler, D. E. Mcnamara, S. Gonen, T. Gonen, T. O. Yeates, D. Baker
Accurate Design Of Co-Assembling Multi-Component Protein Nanomaterials
Nature 2014
PubMed: search  |  Reference-DOI: 10.1038/NATURE13297

(-) Compounds

Molecule 1 - MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN MOGA
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET29B
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneMOGA, SO_0065
    MutationYES
    Organism ScientificSHEWANELLA ONEIDENSIS
    Organism Taxid70863
 
Molecule 2 - CHORISMATE MUTASE AROH
    ChainsB
    EC Number5.4.99.5
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET29B
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneAROG, AROH
    MutationYES
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid274
    StrainHB8

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (12x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:62 , ASP A:66 , ASP A:126BINDING SITE FOR RESIDUE CA A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NWO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NWO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NWO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NWO)

(-) Exons   (0, 0)

(no "Exon" information available for 4NWO)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeehhhhhh....hhhhhhhhhhhhhhh...eeeeeeee..hhhhhhhhhhhhhhh....eeeee.........hhhhhhhhhh.ee.hhhhhhhhhhhh..hhhhhhh...eeee..eeeeee..hhhhhhhhhhhhh.hhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nwo A   3 KAKIGIVTVSDRASAGITADISGKAIILALNLYLTSEWEPIYQVIPDEQDVIETTLIKMADEQDCCLIVTTGGTGPAKRDVTPEATEAVCDRMMPGFGELMRAESLKEVPTAILSRQTAGLRGDSLIVNLPGDPASISDCLLAVFPAIPYCIDLMEGPYLECNEAMIKPFR 173
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172 

Chain B from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeee....hhhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.......hhhhhhhhhhhhhh.eeeee..........eeeeeeeee...hhhhh..eeehhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 4nwo B   1 MVRGIRGAITVNSDTPTSIIIATILLLEKMLEANGIQSYEELAAVIFTVTEDLTSAFPAEAARQIGMHRVPLLSAREVPVPGSLPRVIRVLALWNTDTPQDRVRHVYLSEAVRL 114
                                    10        20        30        40        50        60        70        80        90       100       110    

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NWO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NWO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NWO)

(-) Gene Ontology  (9, 16)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AROH_THETH | Q84FH61ode 1ufy 1ui9
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(-) Related Entries Specified in the PDB File

4nwn 4nwp 4nwq 4nwr