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(-) Description

Title :  COMPUTATIONALLY DESIGNED TWO-COMPONENT SELF-ASSEMBLING TETRAHEDRAL CAGE T33-15
 
Authors :  D. E. Mcnamara, N. P. King, J. B. Bale, W. Sheffler, D. Baker, T. O. Yeates
Date :  06 Dec 13  (Deposition) - 28 May 14  (Release) - 28 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (12x)
Keywords :  Two-Component, Self-Assembling, Tetrahedron, Designed Protein Cage, Computational Design, Protein Engineering, Multimerization, Nanomaterial, Nanostructure, Molybdenum Cofactor Biosynthesis Protein, Mog, Chorismate Mutase, Isomerase, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. P. King, J. B. Bale, W. Sheffler, D. E. Mcnamara, S. Gonen, T. Gonen, T. O. Yeates, D. Baker
Accurate Design Of Co-Assembling Multi-Component Protein Nanomaterials
Nature 2014
PubMed: search  |  Reference-DOI: 10.1038/NATURE13297

(-) Compounds

Molecule 1 - MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN MOGA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET29B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MOGA, SO_0065
    Mutation: YES
    Organism Scientific: SHEWANELLA ONEIDENSIS
    Organism Taxid: 70863
 
Molecule 2 - CHORISMATE MUTASE AROH
    Chains: B
    EC Number: 5.4.99.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET29B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AROG, AROH
    Mutation: YES
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 274
    Strain: HB8

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (12x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:62 , ASP A:66 , ASP A:126BINDING SITE FOR RESIDUE CA A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NWO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NWO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NWO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NWO)

(-) Exons   (0, 0)

(no "Exon" information available for 4NWO)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeehhhhhh....hhhhhhhhhhhhhhh...eeeeeeee..hhhhhhhhhhhhhhh....eeeee.........hhhhhhhhhh.ee.hhhhhhhhhhhh..hhhhhhh...eeee..eeeeee..hhhhhhhhhhhhh.hhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nwo A   3 KAKIGIVTVSDRASAGITADISGKAIILALNLYLTSEWEPIYQVIPDEQDVIETTLIKMADEQDCCLIVTTGGTGPAKRDVTPEATEAVCDRMMPGFGELMRAESLKEVPTAILSRQTAGLRGDSLIVNLPGDPASISDCLLAVFPAIPYCIDLMEGPYLECNEAMIKPFR 173
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172 


Chain B from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeee....hhhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.......hhhhhhhhhhhhhh.eeeee..........eeeeeeeee...hhhhh..eeehhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 4nwo B   1 MVRGIRGAITVNSDTPTSIIIATILLLEKMLEANGIQSYEELAAVIFTVTEDLTSAFPAEAARQIGMHRVPLLSAREVPVPGSLPRVIRVLALWNTDTPQDRVRHVYLSEAVRL 114
                                    10        20        30        40        50        60        70        80        90       100       110
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NWO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NWO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NWO)

(-) Gene Ontology  (9, 16)

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  4nwo
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AROH_THETH | Q84FH6: 1ode 1ufy 1ui9
UniProtKB/TrEMBL
        Q5SJY4_THET8 | Q5SJY4: 4zk7
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(-) Related Entries Specified in the PDB File

4nwn 4nwp 4nwq 4nwr