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(-) Description

Title :  COMPUTATIONALLY DESIGNED TWO-COMPONENT SELF-ASSEMBLING TETRAHEDRAL CAGE, T33-21, CRYSTALLIZED IN SPACE GROUP F4132
 
Authors :  D. E. Mcnamara, N. P. King, J. B. Bale, W. Sheffler, D. Baker, T. O. Yeates
Date :  06 Dec 13  (Deposition) - 28 May 14  (Release) - 28 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (12x)
Keywords :  Two-Component, Self-Assembling, Tetrahedron, Designed Protein Cage, Computational Design, Protein Engineering, Multimerization, Nanomaterial, Nanostructure, Transferase, Isomerase, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. P. King, J. B. Bale, W. Sheffler, D. E. Mcnamara, S. Gonen, T. Gonen, T. O. Yeates, D. Baker
Accurate Design Of Co-Assembling Multi-Component Protein Nanomaterials
Nature 2014
PubMed: search  |  Reference-DOI: 10.1038/NATURE13297

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN PH0671
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET29B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PH0671
    Mutation: YES
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 70601
    Strain: OT3
 
Molecule 2 - UNCHARACTERIZED PROTEIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET29B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PA1966
    Mutation: YES
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: PAO1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (12x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 11)

Asymmetric Unit (1, 11)
No.NameCountTypeFull Name
1SO411Ligand/IonSULFATE ION
Biological Unit 1 (1, 132)
No.NameCountTypeFull Name
1SO4132Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:128 , HOH A:303BINDING SITE FOR RESIDUE SO4 A 201
02AC2SOFTWARESER A:25 , THR A:131 , ARG A:134BINDING SITE FOR RESIDUE SO4 A 202
03AC3SOFTWAREHIS A:46 , LYS A:53BINDING SITE FOR RESIDUE SO4 A 203
04AC4SOFTWARETRP A:86 , LYS A:89 , ARG A:93BINDING SITE FOR RESIDUE SO4 A 204
05AC5SOFTWARETYR A:47BINDING SITE FOR RESIDUE SO4 A 205
06AC6SOFTWAREARG B:107 , HOH B:305BINDING SITE FOR RESIDUE SO4 B 201
07AC7SOFTWAREARG A:134 , ASP B:73 , ILE B:74 , ARG B:77BINDING SITE FOR RESIDUE SO4 B 202
08AC8SOFTWARELEU B:69 , ARG B:72 , ARG B:111 , HOH B:303BINDING SITE FOR RESIDUE SO4 B 203
09AC9SOFTWAREGLY B:19 , TYR B:50 , ARG B:51 , HOH B:306BINDING SITE FOR RESIDUE SO4 B 204
10BC1SOFTWAREPRO B:2 , HIS B:3 , LYS B:41 , TYR B:114 , LYS B:116BINDING SITE FOR RESIDUE SO4 B 205
11BC2SOFTWAREARG B:107BINDING SITE FOR RESIDUE SO4 B 206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NWQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NWQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NWQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NWQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4NWQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nwq A  23 KDSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIAWLLKLILRYMEMVNLKSFVLPGGTLESAKLDVCRTIARRALRKVLTVTREFGIGAEAAAYLLALSDLLFLLARVIEIEKNKLKEV 170
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162        


Chain B from PDB  Type:PROTEIN  Length:121
                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eee..hhhhhhhhhhhhhhh....hhhhheeeeeee.............eeeeeeeee...hhhhhhhhhhhhhhhhhhheeee.....eeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nwq B   2 PHLVIEATANLRLETSPGELLEQANKALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDIATRTLLGASLCAVLAEAVAGGGEEGVQVSVEVREMERLSYAKRVVARQ 122
                                    11        21        31        41        51        61        71        81        91       101       111       121
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NWQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NWQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NWQ)

(-) Gene Ontology  (2, 2)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O58404_PYRHO | O58404: 1wy1 4nwp
        Q9I2D8_PSEAE | Q9I2D8: 3e6q 4nwp

(-) Related Entries Specified in the PDB File

4nwn 4nwo 4nwp 4nwr