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(-) Description

Title :  CRYSTAL STRUCTURE OF MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN MOG FROM SHEWANELLA ONEIDENSIS
 
Authors :  C. Chang, R. Mulligan, F. Collart, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  01 Dec 05  (Deposition) - 17 Jan 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Structural Genomics, Molybdenum Cofactor Biosynthesis Protein Mog, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, R. Mulligan, F. Collart, A. Joachimiak
Crystal Structure Of Molybdenum Cofactor Biosynthesis Protein Mog From Shewanella Oneidensis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN MOG
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG
    Expression System Strain: BL21(DE3) DERIVATIVE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: SHEWANELLA ONEIDENSIS
    Organism Taxid: 70863

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 15)

Asymmetric/Biological Unit (1, 15)
No.NameCountTypeFull Name
1MSE15Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2F7Y)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2F7Y)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2F7Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2F7Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2F7Y)

(-) Exons   (0, 0)

(no "Exon" information available for 2F7Y)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:173
 aligned with Q8EKM7_SHEON | Q8EKM7 from UniProtKB/TrEMBL  Length:177

    Alignment length:173
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172   
         Q8EKM7_SHEON     3 KAKIGIVTVSDRASAGIYEDISGKAIIDTLNDYLTSEWEPIYQVIPDEQDVIETTLIKMADEQDCCLIVTTGGTGPAKRDVTPEATEAVCDRMMPGFGELMRAESLKFVPTAILSRQTAGLRGDSLIVNLPGKPKSIRECLDAVFPAIPYCIDLMEGPYLECNEAVIKPFRPK 175
               SCOP domains d2f7ya_ A: automated matches                                                                                                                                                  SCOP domains
               CATH domains 2f7yA00 A:3-175 Molybdenum Cofactor Biosythetic Enzyme; Chain A                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeehhhhhh....hhhhhhhhhhhhhhh...eeeeeeee..hhhhhhhhhhhhhhh....eeeee.........hhhhhhhhhh.eehhhhhhhhhhhhhhhhhhhhhh...eeee..eeeeee..hhhhhhhhhhhhh.hhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f7y A   3 KAKIGIVTVSDRASAGIYEDISGKAIIDTLNDYLTSEWEPIYQVIPDEQDVIETTLIKmADEQDCCLIVTTGGTGPAKRDVTPEATEAVCDRmmPGFGELmRAESLKFVPTAILSRQTAGLRGDSLIVNLPGKPKSIRECLDAVFPAIPYCIDLmEGPYLECNEAVIKPFRPK 175
                                    12        22        32        42        52        62        72        82        92  ||   102|      112       122       132       142       152    |  162       172   
                                                                                     61-MSE                            95-MSE   |                                                   157-MSE              
                                                                                                                        96-MSE  |                                                                        
                                                                                                                              103-MSE                                                                    


Chain B from PDB  Type:PROTEIN  Length:168
 aligned with Q8EKM7_SHEON | Q8EKM7 from UniProtKB/TrEMBL  Length:177

    Alignment length:170
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174
         Q8EKM7_SHEON     5 KIGIVTVSDRASAGIYEDISGKAIIDTLNDYLTSEWEPIYQVIPDEQDVIETTLIKMADEQDCCLIVTTGGTGPAKRDVTPEATEAVCDRMMPGFGELMRAESLKFVPTAILSRQTAGLRGDSLIVNLPGKPKSIRECLDAVFPAIPYCIDLMEGPYLECNEAVIKPFRP 174
               SCOP domains d2f7yb_ B:   automated matches                                                                                                                                             SCOP domains
               CATH domains 2f7yB00 B:5  -174 Molybdenum Cofactor Biosythetic Enzyme; Chain A                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....--....hhhhhhhhhhhhhhh.....eeeeee..hhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhh.eehhhhhhhhhhhhhhhhhhhhhh...eeee..eeeeee..hhhhhhhhhhhhh.hhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f7y B   5 KIGIVTVSDRA--GIYEDISGKAIIDTLNDYLTSEWEPIYQVIPDEQDVIETTLIKmADEQDCCLIVTTGGTGPAKRDVTPEATEAVCDRmmPGFGELmRAESLKFVPTAILSRQTAGLRGDSLIVNLPGKPKSIRECLDAVFPAIPYCIDLmEGPYLECNEAVIKPFRP 174
                                    14|  |    24        34        44        54      | 64        74        84        94||     104       114       124       134       144       154  |    164       174
                                     15 18                                         61-MSE                            95-MSE   |                                                   157-MSE             
                                                                                                                      96-MSE  |                                                                       
                                                                                                                            103-MSE                                                                   


Chain C from PDB  Type:PROTEIN  Length:171
 aligned with Q8EKM7_SHEON | Q8EKM7 from UniProtKB/TrEMBL  Length:177

    Alignment length:171
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173 
         Q8EKM7_SHEON     4 AKIGIVTVSDRASAGIYEDISGKAIIDTLNDYLTSEWEPIYQVIPDEQDVIETTLIKMADEQDCCLIVTTGGTGPAKRDVTPEATEAVCDRMMPGFGELMRAESLKFVPTAILSRQTAGLRGDSLIVNLPGKPKSIRECLDAVFPAIPYCIDLMEGPYLECNEAVIKPFRP 174
               SCOP domains d2f7yc_ C: automated matches                                                                                                                                                SCOP domains
               CATH domains 2f7yC00 C:4-174 Molybdenum Cofactor Biosythetic Enzyme; Chain A                                                                                                             CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeehhhhhh....hhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhh..eeeeeee.........hhhhhhhhhh.eehhhhhhhhhhhhhhhhhhhhhh...eeee..eeeeee..hhhhhhhhhhhhh.hhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f7y C   4 AKIGIVTVSDRASAGIYEDISGKAIIDTLNDYLTSEWEPIYQVIPDEQDVIETTLIKmADEQDCCLIVTTGGTGPAKRDVTPEATEAVCDRmmPGFGELmRAESLKFVPTAILSRQTAGLRGDSLIVNLPGKPKSIRECLDAVFPAIPYCIDLmEGPYLECNEAVIKPFRP 174
                                    13        23        33        43        53       |63        73        83        93 ||    103       113       123       133       143       153   |   163       173 
                                                                                    61-MSE                            95-MSE   |                                                   157-MSE             
                                                                                                                       96-MSE  |                                                                       
                                                                                                                             103-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2F7Y)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (Q8EKM7_SHEON | Q8EKM7)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006777    Mo-molybdopterin cofactor biosynthetic process    The chemical reactions and pathways resulting in the formation of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands.
    GO:0032324    molybdopterin cofactor biosynthetic process    The chemical reactions and pathways resulting in the formation of the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8EKM7_SHEON | Q8EKM7: 2f7w 3k6a 4nwo

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