4NU7 - JenaLib

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Title :   2.05 ANGSTROM CRYSTAL STRUCTURE OF RIBULOSE-PHOSPHATE 3-EPIMERASE FROM TOXOPLASMA GONDII.

Authors :   G. Minasov, J. Ruan, H. Ngo, L. Shuvalova, I. Dubrovska, K. Flores, W. F. Center For Structural Genomics Of Infectious Diseases (Csgi

Date :   03 Dec 13 (Deposition) - 18 Dec 13 (Release) - 22 Jan 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,C  (1x)
Biol. Unit 2: B,D  (1x)
Biol. Unit 3: A,C  (3x)
Biol. Unit 4: B,D  (3x)

Keywords :   Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Tim Barrel, Ribulose-Phosphate 3-Epimerase, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Minasov, J. Ruan, H. Ngo, L. Shuvalova, I. Dubrovska, K. Flores, D. Shanmugam, D. Roos, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
2. 05 Angstrom Crystal Structure Of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii.
To Be Published
PubMed: search

Molecule 1 - RIBULOSE-PHOSPHATE 3-EPIMERASE
	Chains	:	A, B, C, D
	EC Number	:	5.1.3.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG28
	Expression System Strain	:	BL21(DE3)/PMAGIC
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLAZMID
	Gene	:	RPE, TGVEG_004130
	Organism Scientific	:	TOXOPLASMA GONDII
	Organism Taxid	:	5811
	Strain	:	ME49

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A		C
Biological Unit 2 (1x)	:		B		D
Biological Unit 3 (3x)	:	A		C
Biological Unit 4 (3x)	:		B		D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 21)

No.	Name	Count	Type	Full Name
1	CL	5	Ligand/Ion	CHLORIDE ION
2	SO4	12	Ligand/Ion	SULFATE ION
3	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 7)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	SO4	7	Ligand/Ion	SULFATE ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 5)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	SO4	5	Ligand/Ion	SULFATE ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (1, 21)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	SO4	21	Ligand/Ion	SULFATE ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (1, 15)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	SO4	15	Ligand/Ion	SULFATE ION
3	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (21, 21)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:44 , HOH C:496	BINDING SITE FOR RESIDUE CL A 301
02	AC2	SOFTWARE	ARG A:112 , SO4 A:308	BINDING SITE FOR RESIDUE CL A 302
03	AC3	SOFTWARE	HIS A:37 , ASP A:39 , HIS A:71 , ASP A:182 , HOH A:434	BINDING SITE FOR RESIDUE ZN A 303
04	AC4	SOFTWARE	GLY A:155 , GLY A:156 , GLY A:183 , GLY A:184 , GLY A:204 , THR A:205 , HOH A:410 , HOH A:423 , HOH A:508	BINDING SITE FOR RESIDUE SO4 A 304
05	AC5	SOFTWARE	GLU A:97 , LYS A:125 , HOH A:418 , HOH A:479 , HIS B:44 , HIS D:44 , SER D:75	BINDING SITE FOR RESIDUE SO4 A 305
06	AC6	SOFTWARE	THR A:218 , ARG A:221	BINDING SITE FOR RESIDUE SO4 A 306
07	AC7	SOFTWARE	ARG A:112 , LYS C:191	BINDING SITE FOR RESIDUE SO4 A 307
08	AC8	SOFTWARE	ARG A:112 , ARG A:116 , CL A:302 , HOH A:430 , HOH A:527 , GLY C:187 , GLU C:188 , HOH C:478	BINDING SITE FOR RESIDUE SO4 A 308
09	AC9	SOFTWARE	GLU B:188 , ARG D:112 , ARG D:116 , HOH D:492	BINDING SITE FOR RESIDUE CL B 301
10	BC1	SOFTWARE	ALA B:85 , ARG B:116	BINDING SITE FOR RESIDUE CL B 302
11	BC2	SOFTWARE	HIS B:37 , ASP B:39 , HIS B:71 , ASP B:182	BINDING SITE FOR RESIDUE ZN B 303
12	BC3	SOFTWARE	GLY B:155 , GLY B:156 , GLY B:183 , GLY B:184 , GLY B:204 , THR B:205 , HOH B:409 , HOH B:415 , HOH B:495 , HOH B:502 , HOH B:509	BINDING SITE FOR RESIDUE SO4 B 304
13	BC4	SOFTWARE	ILE B:81 , ARG B:112 , ARG B:116 , HOH B:437 , HOH B:445 , LYS C:79 , GLN C:82 , PRO C:83 , HOH C:441	BINDING SITE FOR RESIDUE SO4 B 305
14	BC5	SOFTWARE	THR B:218 , ARG B:221 , HOH B:465 , HOH B:473	BINDING SITE FOR RESIDUE SO4 B 306
15	BC6	SOFTWARE	THR C:218 , ARG C:221	BINDING SITE FOR RESIDUE CL C 301
16	BC7	SOFTWARE	HIS C:37 , ASP C:39 , HIS C:71 , ASP C:182 , HOH C:513	BINDING SITE FOR RESIDUE ZN C 302
17	BC8	SOFTWARE	GLY C:155 , GLY C:156 , GLY C:183 , GLY C:184 , GLY C:204 , THR C:205 , HOH C:403 , HOH C:422 , HOH C:426 , HOH C:429 , HOH C:506	BINDING SITE FOR RESIDUE SO4 C 303
18	BC9	SOFTWARE	HIS A:44 , HIS C:44 , SER C:75 , HOH C:451 , HOH C:489	BINDING SITE FOR RESIDUE SO4 C 304
19	CC1	SOFTWARE	HIS D:37 , ASP D:39 , HIS D:71 , ASP D:182 , HOH D:527	BINDING SITE FOR RESIDUE ZN D 301
20	CC2	SOFTWARE	GLY D:155 , GLY D:156 , GLY D:183 , GLY D:184 , GLY D:204 , THR D:205 , HOH D:417 , HOH D:468 , HOH D:483 , HOH D:502	BINDING SITE FOR RESIDUE SO4 D 302
21	CC3	SOFTWARE	THR D:218 , ARG D:221 , HOH D:485	BINDING SITE FOR RESIDUE SO4 D 303

(no "SS Bond" information available for 4NU7)

(no "Cis Peptide Bond" information available for 4NU7)

(no "SAP(SNP)/Variant" information available for 4NU7)

(no "PROSITE Motif" information available for 4NU7)

(no "Exon" information available for 4NU7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains d4nu7a_ A: automated matches                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.hhhh...hhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhh..eeeee.hhhh.hhhhhhhhhhhhhhh..eeeeee....hhhhhh..hhhhh..eeeee...........hhhhhhhhhhhhhhh...eeeee......hhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nu7 A   4 QLKPIICPSVLASDLSSLASDAKRMVDAGCDWLHLDIMDGHFVPNISFGPGVVKALRGHLKSAFFDVHLMVSEPEKWIQPFADAGANSITFHWESVGGDLQRAAELAKRIQARGIKAGLAIKPATKFEDLGEALAGDNFDMLLVMTVEPGFGGQKFMADMLQKVRTARSLFPKLNIQVDGGLDGETVKPAASAGANVIVAGTSMFKAENPAALMTFMRDVIAASD 228
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223

Chain B from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains d4nu7b_ B: automated matches                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.hhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhh..eeeee.hhhh.hhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhh....eeeee...........hhhhhhhhhhhhhhh...eeeee......hhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nu7 B   4 QLKPIICPSVLASDLSSLASDAKRMVDAGCDWLHLDIMDGHFVPNISFGPGVVKALRGHLKSAFFDVHLMVSEPEKWIQPFADAGANSITFHWESVGGDLQRAAELAKRIQARGIKAGLAIKPATKFEDLGEALAGDNFDMLLVMTVEPGFGGQKFMADMLQKVRTARSLFPKLNIQVDGGLDGETVKPAASAGANVIVAGTSMFKAENPAALMTFMRDVIAASD 228
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223

Chain C from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains d4nu7c_ C: automated matches                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.hhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhh...eeeee.hhhh.hhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhh....eeeee...........hhhhhhhhhhhhhhh...eeeee......hhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nu7 C   4 QLKPIICPSVLASDLSSLASDAKRMVDAGCDWLHLDIMDGHFVPNISFGPGVVKALRGHLKSAFFDVHLMVSEPEKWIQPFADAGANSITFHWESVGGDLQRAAELAKRIQARGIKAGLAIKPATKFEDLGEALAGDNFDMLLVMTVEPGFGGQKFMADMLQKVRTARSLFPKLNIQVDGGLDGETVKPAASAGANVIVAGTSMFKAENPAALMTFMRDVIAASDTL 230
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223

Chain D from PDB  Type:PROTEIN  Length:226
                                                                                                                                                                                                                                                                  
               SCOP domains d4nu7d_ D: automated matches                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.hhhh...hhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhh..eeeee.hhhh.hhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhh.....eeeee...........hhhhhhhhhhhhhhh...eeeee......hhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nu7 D   3 SQLKPIICPSVLASDLSSLASDAKRMVDAGCDWLHLDIMDGHFVPNISFGPGVVKALRGHLKSAFFDVHLMVSEPEKWIQPFADAGANSITFHWESVGGDLQRAAELAKRIQARGIKAGLAIKPATKFEDLGEALAGDNFDMLLVMTVEPGFGGQKFMADMLQKVRTARSLFPKLNIQVDGGLDGETVKPAASAGANVIVAGTSMFKAENPAALMTFMRDVIAASD 228
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222

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Asymmetric Unit

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Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Ribulose-phoshate binding barrel (356)

Family: automated matches (38)

Protein domain: automated matches (38)

Toxoplasma gondii [TaxId: 5811] (1)

1a	d4nu7a_	A:
1b	d4nu7b_	B:
1c	d4nu7c_	C:
1d	d4nu7d_	D:

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