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4NU7
Biol. Unit 3
Info
Asym.Unit (317 KB)
Biol.Unit 1 (157 KB)
Biol.Unit 2 (154 KB)
Biol.Unit 3 (464 KB)
Biol.Unit 4 (453 KB)
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(1)
Title
:
2.05 ANGSTROM CRYSTAL STRUCTURE OF RIBULOSE-PHOSPHATE 3-EPIMERASE FROM TOXOPLASMA GONDII.
Authors
:
G. Minasov, J. Ruan, H. Ngo, L. Shuvalova, I. Dubrovska, K. Flores, W. F. Center For Structural Genomics Of Infectious Diseases (Csgi
Date
:
03 Dec 13 (Deposition) - 18 Dec 13 (Release) - 22 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,C (3x)
Biol. Unit 4: B,D (3x)
Keywords
:
Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Tim Barrel, Ribulose-Phosphate 3-Epimerase, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
G. Minasov, J. Ruan, H. Ngo, L. Shuvalova, I. Dubrovska, K. Flores, D. Shanmugam, D. Roos, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
2. 05 Angstrom Crystal Structure Of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii.
To Be Published
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Hetero Components
(1, 21)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
SO4
21
Ligand/Ion
SULFATE ION
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: BC4 (SOFTWARE)
10: BC6 (SOFTWARE)
11: BC7 (SOFTWARE)
12: BC8 (SOFTWARE)
13: BC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:44 , HOH C:496
BINDING SITE FOR RESIDUE CL A 301
02
AC2
SOFTWARE
ARG A:112 , SO4 A:308
BINDING SITE FOR RESIDUE CL A 302
03
AC3
SOFTWARE
HIS A:37 , ASP A:39 , HIS A:71 , ASP A:182 , HOH A:434
BINDING SITE FOR RESIDUE ZN A 303
04
AC4
SOFTWARE
GLY A:155 , GLY A:156 , GLY A:183 , GLY A:184 , GLY A:204 , THR A:205 , HOH A:410 , HOH A:423 , HOH A:508
BINDING SITE FOR RESIDUE SO4 A 304
05
AC5
SOFTWARE
GLU A:97 , LYS A:125 , HOH A:418 , HOH A:479 , HIS B:44 , HIS D:44 , SER D:75
BINDING SITE FOR RESIDUE SO4 A 305
06
AC6
SOFTWARE
THR A:218 , ARG A:221
BINDING SITE FOR RESIDUE SO4 A 306
07
AC7
SOFTWARE
ARG A:112 , LYS C:191
BINDING SITE FOR RESIDUE SO4 A 307
08
AC8
SOFTWARE
ARG A:112 , ARG A:116 , CL A:302 , HOH A:430 , HOH A:527 , GLY C:187 , GLU C:188 , HOH C:478
BINDING SITE FOR RESIDUE SO4 A 308
09
BC4
SOFTWARE
ILE B:81 , ARG B:112 , ARG B:116 , HOH B:437 , HOH B:445 , LYS C:79 , GLN C:82 , PRO C:83 , HOH C:441
BINDING SITE FOR RESIDUE SO4 B 305
10
BC6
SOFTWARE
THR C:218 , ARG C:221
BINDING SITE FOR RESIDUE CL C 301
11
BC7
SOFTWARE
HIS C:37 , ASP C:39 , HIS C:71 , ASP C:182 , HOH C:513
BINDING SITE FOR RESIDUE ZN C 302
12
BC8
SOFTWARE
GLY C:155 , GLY C:156 , GLY C:183 , GLY C:184 , GLY C:204 , THR C:205 , HOH C:403 , HOH C:422 , HOH C:426 , HOH C:429 , HOH C:506
BINDING SITE FOR RESIDUE SO4 C 303
13
BC9
SOFTWARE
HIS A:44 , HIS C:44 , SER C:75 , HOH C:451 , HOH C:489
BINDING SITE FOR RESIDUE SO4 C 304
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4nu7a_ (A:)
1b: SCOP_d4nu7b_ (B:)
1c: SCOP_d4nu7c_ (C:)
1d: SCOP_d4nu7d_ (D:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Ribulose-phoshate binding barrel
(356)
Family
:
automated matches
(38)
Protein domain
:
automated matches
(38)
Toxoplasma gondii [TaxId: 5811]
(1)
1a
d4nu7a_
A:
1b
d4nu7b_
B:
1c
d4nu7c_
C:
1d
d4nu7d_
D:
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CATH Domains
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Pfam Domains
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Asym.Unit (317 KB)
Header - Asym.Unit
Biol.Unit 1 (157 KB)
Header - Biol.Unit 1
Biol.Unit 2 (154 KB)
Header - Biol.Unit 2
Biol.Unit 3 (464 KB)
Header - Biol.Unit 3
Biol.Unit 4 (453 KB)
Header - Biol.Unit 4
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