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4NU7
Asym. Unit
Info
Asym.Unit (317 KB)
Biol.Unit 1 (157 KB)
Biol.Unit 2 (154 KB)
Biol.Unit 3 (464 KB)
Biol.Unit 4 (453 KB)
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(1)
Title
:
2.05 ANGSTROM CRYSTAL STRUCTURE OF RIBULOSE-PHOSPHATE 3-EPIMERASE FROM TOXOPLASMA GONDII.
Authors
:
G. Minasov, J. Ruan, H. Ngo, L. Shuvalova, I. Dubrovska, K. Flores, W. F. Center For Structural Genomics Of Infectious Diseases (Csgi
Date
:
03 Dec 13 (Deposition) - 18 Dec 13 (Release) - 22 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,C (3x)
Biol. Unit 4: B,D (3x)
Keywords
:
Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Tim Barrel, Ribulose-Phosphate 3-Epimerase, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Minasov, J. Ruan, H. Ngo, L. Shuvalova, I. Dubrovska, K. Flores, D. Shanmugam, D. Roos, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
2. 05 Angstrom Crystal Structure Of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii.
To Be Published
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Hetero Components
(3, 21)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
5
Ligand/Ion
CHLORIDE ION
2
SO4
12
Ligand/Ion
SULFATE ION
3
ZN
4
Ligand/Ion
ZINC ION
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:44 , HOH C:496
BINDING SITE FOR RESIDUE CL A 301
02
AC2
SOFTWARE
ARG A:112 , SO4 A:308
BINDING SITE FOR RESIDUE CL A 302
03
AC3
SOFTWARE
HIS A:37 , ASP A:39 , HIS A:71 , ASP A:182 , HOH A:434
BINDING SITE FOR RESIDUE ZN A 303
04
AC4
SOFTWARE
GLY A:155 , GLY A:156 , GLY A:183 , GLY A:184 , GLY A:204 , THR A:205 , HOH A:410 , HOH A:423 , HOH A:508
BINDING SITE FOR RESIDUE SO4 A 304
05
AC5
SOFTWARE
GLU A:97 , LYS A:125 , HOH A:418 , HOH A:479 , HIS B:44 , HIS D:44 , SER D:75
BINDING SITE FOR RESIDUE SO4 A 305
06
AC6
SOFTWARE
THR A:218 , ARG A:221
BINDING SITE FOR RESIDUE SO4 A 306
07
AC7
SOFTWARE
ARG A:112 , LYS C:191
BINDING SITE FOR RESIDUE SO4 A 307
08
AC8
SOFTWARE
ARG A:112 , ARG A:116 , CL A:302 , HOH A:430 , HOH A:527 , GLY C:187 , GLU C:188 , HOH C:478
BINDING SITE FOR RESIDUE SO4 A 308
09
AC9
SOFTWARE
GLU B:188 , ARG D:112 , ARG D:116 , HOH D:492
BINDING SITE FOR RESIDUE CL B 301
10
BC1
SOFTWARE
ALA B:85 , ARG B:116
BINDING SITE FOR RESIDUE CL B 302
11
BC2
SOFTWARE
HIS B:37 , ASP B:39 , HIS B:71 , ASP B:182
BINDING SITE FOR RESIDUE ZN B 303
12
BC3
SOFTWARE
GLY B:155 , GLY B:156 , GLY B:183 , GLY B:184 , GLY B:204 , THR B:205 , HOH B:409 , HOH B:415 , HOH B:495 , HOH B:502 , HOH B:509
BINDING SITE FOR RESIDUE SO4 B 304
13
BC4
SOFTWARE
ILE B:81 , ARG B:112 , ARG B:116 , HOH B:437 , HOH B:445 , LYS C:79 , GLN C:82 , PRO C:83 , HOH C:441
BINDING SITE FOR RESIDUE SO4 B 305
14
BC5
SOFTWARE
THR B:218 , ARG B:221 , HOH B:465 , HOH B:473
BINDING SITE FOR RESIDUE SO4 B 306
15
BC6
SOFTWARE
THR C:218 , ARG C:221
BINDING SITE FOR RESIDUE CL C 301
16
BC7
SOFTWARE
HIS C:37 , ASP C:39 , HIS C:71 , ASP C:182 , HOH C:513
BINDING SITE FOR RESIDUE ZN C 302
17
BC8
SOFTWARE
GLY C:155 , GLY C:156 , GLY C:183 , GLY C:184 , GLY C:204 , THR C:205 , HOH C:403 , HOH C:422 , HOH C:426 , HOH C:429 , HOH C:506
BINDING SITE FOR RESIDUE SO4 C 303
18
BC9
SOFTWARE
HIS A:44 , HIS C:44 , SER C:75 , HOH C:451 , HOH C:489
BINDING SITE FOR RESIDUE SO4 C 304
19
CC1
SOFTWARE
HIS D:37 , ASP D:39 , HIS D:71 , ASP D:182 , HOH D:527
BINDING SITE FOR RESIDUE ZN D 301
20
CC2
SOFTWARE
GLY D:155 , GLY D:156 , GLY D:183 , GLY D:184 , GLY D:204 , THR D:205 , HOH D:417 , HOH D:468 , HOH D:483 , HOH D:502
BINDING SITE FOR RESIDUE SO4 D 302
21
CC3
SOFTWARE
THR D:218 , ARG D:221 , HOH D:485
BINDING SITE FOR RESIDUE SO4 D 303
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4nu7a_ (A:)
1b: SCOP_d4nu7b_ (B:)
1c: SCOP_d4nu7c_ (C:)
1d: SCOP_d4nu7d_ (D:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Ribulose-phoshate binding barrel
(356)
Family
:
automated matches
(38)
Protein domain
:
automated matches
(38)
Toxoplasma gondii [TaxId: 5811]
(1)
1a
d4nu7a_
A:
1b
d4nu7b_
B:
1c
d4nu7c_
C:
1d
d4nu7d_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Chain C
Chain D
Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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wireframe 100
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Asym.Unit (317 KB)
Header - Asym.Unit
Biol.Unit 1 (157 KB)
Header - Biol.Unit 1
Biol.Unit 2 (154 KB)
Header - Biol.Unit 2
Biol.Unit 3 (464 KB)
Header - Biol.Unit 3
Biol.Unit 4 (453 KB)
Header - Biol.Unit 4
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