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(-) Description

Title :  CFTR ASSOCIATED LIGAND (CAL) PDZ DOMAIN BOUND TO PEPTIDE ICAL36(TFA-K-1) (ANSRWPTS[TFA-ACYL-K]I)
 
Authors :  J. F. Amacher, D. R. Madden
Date :  15 Nov 13  (Deposition) - 01 Oct 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Cal, Pist, Gopc, Fig, Cftr, Pdz, Pdz-Peptide, Protein Transport- Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. F. Amacher, R. Zhao, M. R. Spaller, D. R. Madden
Chemically Modified Peptide Scaffolds Target The Cftr-Associated Ligand Pdz Domain.
Plos One V. 9 03650 2014
PubMed-ID: 25136860  |  Reference-DOI: 10.1371/JOURNAL.PONE.0103650

(-) Compounds

Molecule 1 - GOLGI-ASSOCIATED PDZ AND COILED-COIL MOTIF-CONTAINING PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET16B
    Expression System Strain: BL21(DE3)RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 284-370
    Gene: GOPC, CAL, FIG
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CFTR-ASSOCIATED LIGAND, FUSED IN GLIOBLASTOMA, PDZ PROTEIN INTERACTING SPECIFICALLY WITH TC10, PIST
 
Molecule 2 - ICAL36(TFA-K-1) PEPTIDE
    Chains: C, D
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1FAK2Mod. Amino AcidN~6~-(TRIFLUOROACETYL)-L-LYSINE
2GOL2Ligand/IonGLYCEROL
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1FAK1Mod. Amino AcidN~6~-(TRIFLUOROACETYL)-L-LYSINE
2GOL1Ligand/IonGLYCEROL
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1FAK1Mod. Amino AcidN~6~-(TRIFLUOROACETYL)-L-LYSINE
2GOL1Ligand/IonGLYCEROL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:292 , LYS A:293 , GLU A:294 , LYS A:350 , HOH A:537BINDING SITE FOR RESIDUE GOL A 401
2AC2SOFTWAREASP A:295 , ASP A:346 , LYS A:348 , GLU A:351 , LYS B:288 , GLU B:364 , HOH B:565 , HOH B:574BINDING SITE FOR RESIDUE GOL B 401
3AC3SOFTWAREGLY A:298 , LEU A:299 , GLY A:300 , ILE A:301 , SER A:302 , ILE A:303 , THR A:304 , HIS A:309 , HIS A:349 , VAL A:353 , HOH A:501 , ILE B:286 , PRO B:312 , LEU B:337 , ARG B:345 , VAL B:368 , VAL B:370 , HOH B:564 , HOH C:101 , HOH C:102 , HOH C:103 , HOH C:104 , HOH C:106 , HOH C:107 , HOH C:108 , HOH C:109 , HOH C:110 , HOH C:112BINDING SITE FOR CHAIN C OF ICAL36(TFA-K-1) PEPTIDE
4AC4SOFTWAREGLY A:284 , PRO A:285 , ILE A:286 , ASP A:325 , LEU A:337 , ARG A:345 , VAL A:370 , LEU B:292 , GLY B:298 , LEU B:299 , GLY B:300 , ILE B:301 , SER B:302 , ILE B:303 , THR B:304 , HIS B:309 , VAL B:311 , GLU B:317 , HIS B:319 , HIS B:349 , VAL B:353 , SER B:357 , ARG B:360 , GLY B:361 , GLU B:362 , HOH D:101 , HOH D:103 , HOH D:105 , HOH D:106 , HOH D:107 , HOH D:109 , HOH D:110 , HOH D:111 , HOH D:112 , HOH D:116 , HOH D:117BINDING SITE FOR CHAIN D OF ICAL36(TFA-K-1) PEPTIDE

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NMT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NMT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NMT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NMT)

(-) Exons   (0, 0)

(no "Exon" information available for 4NMT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:87
                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee........eeeeeehhhheeeeeeee...hhhhhhh.....eeeeee..ee....hhhhhhhhhhhh..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 4nmt A 284 GPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYV 370
                                   293       303       313       323       333       343       353       363       


Chain B from PDB  Type:PROTEIN  Length:87
                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.......eeeeeehhhheeeeeeee...hhhhhhh......eeeee..ee....hhhhhhhhhhhh.eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 4nmt B 284 GPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYV 370
                                   293       303       313       323       333       343       353       363       


Chain C from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ...eeee Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 4nmt C   4 RWPTSkI  10
                                 | 
                                 9-FAK


Chain D from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......eee Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 4nmt D   1 ANSRWPTSkI  10
                                    10
                                    9-FAK
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NMT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NMT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NMT)

(-) Gene Ontology  (24, 24)

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 Related Entries

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UniProtKB/Swiss-Prot
        GOPC_HUMAN | Q9HD26: 2dc2 2lob 4e34 4e35 4joe 4jof 4jog 4joh 4joj 4jok 4jop 4jor 4k6y 4k72 4k75 4k76 4k78 4nmo 4nmp 4nmq 4nmr 4nms 4nmv 4q6h 4q6s

(-) Related Entries Specified in the PDB File

4nmo 4nmp 4nmq 4nmr 4nms 4nmv