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(-) Description

Title :  CRYSTAL STRUCTURE OF TSE3-TSI3 COMPLEX WITH ZINC ION
 
Authors :  G. J. Shang
Date :  16 Oct 13  (Deposition) - 23 Apr 14  (Release) - 18 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Lysozyme Fold, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Lu, G. Shang, H. Zhang, Q. Yu, X. Cong, J. Yuan, F. He, C. Zhu, Y. Zhao, K. Yin, Y. Chen, J. Hu, X. Zhang, Z. Yuan, S. Xu, W. Hu, H. Cang, L. Gu
Structural Insights Into The T6Ss Effector Protein Tse3 And The Tse3-Tsi3 Complex From Pseudomonas Aeruginosa Reveal A Calcium-Dependent Membrane-Binding Mechanism
Mol. Microbiol. V. 92 1092 2014
PubMed-ID: 24724564  |  Reference-DOI: 10.1111/MMI.12616

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 2-402
    Gene: PA3484
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228
 
Molecule 2 - INHIBITOR
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 28-144
    Gene: PA3484
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 32)

Asymmetric Unit (6, 32)
No.NameCountTypeFull Name
1ACT17Ligand/IonACETATE ION
2CA2Ligand/IonCALCIUM ION
3CL2Ligand/IonCHLORIDE ION
4GOL3Ligand/IonGLYCEROL
5NA1Ligand/IonSODIUM ION
6ZN7Ligand/IonZINC ION
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1ACT11Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3CL-1Ligand/IonCHLORIDE ION
4GOL1Ligand/IonGLYCEROL
5NA-1Ligand/IonSODIUM ION
6ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3CL-1Ligand/IonCHLORIDE ION
4GOL2Ligand/IonGLYCEROL
5NA-1Ligand/IonSODIUM ION
6ZN-1Ligand/IonZINC ION

(-) Sites  (32, 32)

Asymmetric Unit (32, 32)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:25 , HOH A:652 , HOH A:675 , HOH A:861 , HOH A:893BINDING SITE FOR RESIDUE ZN A 501
02AC2SOFTWAREGLU A:258 , ASP A:262 , GLN A:280 , HOH A:892 , GLU B:126BINDING SITE FOR RESIDUE ZN A 502
03AC3SOFTWAREGLU A:375 , SER A:378 , ARG A:379 , ASP A:382 , ASN A:384 , HOH A:643BINDING SITE FOR RESIDUE ZN A 503
04AC4SOFTWAREVAL A:38 , PRO A:39 , ASP A:40 , ALA A:41BINDING SITE FOR RESIDUE CL A 504
05AC5SOFTWAREALA A:286 , GLU A:290 , LEU A:291 , PHE A:292 , ARG A:301 , HOH A:703 , HOH A:862BINDING SITE FOR RESIDUE ACT A 505
06AC6SOFTWAREASP A:185 , HOH A:860BINDING SITE FOR RESIDUE ACT A 506
07AC7SOFTWAREARG A:124 , THR A:293 , LEU A:295 , GLY A:297 , HOH A:894BINDING SITE FOR RESIDUE ACT A 507
08AC8SOFTWAREGLN A:165 , ALA A:265 , LYS A:270 , HOH A:859BINDING SITE FOR RESIDUE ACT A 508
09AC9SOFTWARETYR A:289 , HOH A:773BINDING SITE FOR RESIDUE ACT A 509
10BC1SOFTWARELEU A:183 , GLY A:184 , ASP A:185 , HOH A:749 , HOH A:787BINDING SITE FOR RESIDUE ACT A 510
11BC2SOFTWAREASN A:181 , ASP A:253 , GLN A:254 , GLU A:258 , GLN A:280 , HOH A:606 , HOH A:658BINDING SITE FOR RESIDUE CA A 511
12BC3SOFTWAREASP A:6 , GLU B:49 , HOH B:312 , HOH B:322BINDING SITE FOR RESIDUE ZN B 201
13BC4SOFTWAREGLN A:280 , VAL A:281 , VAL A:282 , THR A:285 , TYR A:326 , HOH A:678 , GLY B:98 , SER B:99BINDING SITE FOR RESIDUE ACT B 202
14BC5SOFTWAREARG B:81 , TYR B:90 , HOH B:356BINDING SITE FOR RESIDUE ACT B 203
15BC6SOFTWAREGLY B:56 , GLY B:57BINDING SITE FOR RESIDUE ACT B 204
16BC7SOFTWAREARG B:38BINDING SITE FOR RESIDUE ACT B 205
17BC8SOFTWAREGLN B:64 , LEU B:65 , GLU B:66 , SER B:120 , ALA B:121 , SER B:122BINDING SITE FOR RESIDUE ACT B 206
18BC9SOFTWARETHR A:2 , ASP A:6 , GLU A:9 , ARG B:69 , ASP B:71 , HOH B:322BINDING SITE FOR RESIDUE GOL B 207
19CC1SOFTWAREGLU C:25 , HOH C:601 , HOH C:602 , HOH C:605 , HOH C:739BINDING SITE FOR RESIDUE ZN C 501
20CC2SOFTWAREGLU C:258 , ASP C:262 , GLN C:280 , HOH C:746 , GLU D:126BINDING SITE FOR RESIDUE ZN C 502
21CC3SOFTWAREGLU C:375 , SER C:378 , ARG C:379 , ASP C:382 , ASN C:384 , HOH C:631BINDING SITE FOR RESIDUE ZN C 503
22CC4SOFTWAREGLY C:126 , ALA C:128BINDING SITE FOR RESIDUE CL C 504
23CC5SOFTWARELEU C:183 , ASP C:253BINDING SITE FOR RESIDUE NA C 505
24CC6SOFTWAREALA C:286 , GLU C:290 , LEU C:291 , PHE C:292 , THR C:293 , ARG C:301 , HOH C:740BINDING SITE FOR RESIDUE ACT C 506
25CC7SOFTWARELEU A:401 , ASP A:402 , HOH A:878 , SER C:13 , TYR C:14 , HOH C:718BINDING SITE FOR RESIDUE ACT C 507
26CC8SOFTWAREGLN C:165 , GLN C:264 , LYS C:270BINDING SITE FOR RESIDUE ACT C 508
27CC9SOFTWAREILE C:88 , ARG C:89 , GLN C:192 , ASP C:197BINDING SITE FOR RESIDUE ACT C 509
28DC1SOFTWARESER A:194 , GLN A:196 , GLN C:57 , ASN C:93 , HOH C:650BINDING SITE FOR RESIDUE GOL C 510
29DC2SOFTWAREARG C:325 , ARG C:328 , TYR C:329BINDING SITE FOR RESIDUE GOL C 511
30DC3SOFTWAREASN C:181 , ASP C:253 , GLN C:254 , GLU C:258 , GLN C:280 , HOH C:607 , HOH C:628BINDING SITE FOR RESIDUE CA C 512
31DC4SOFTWAREVAL C:281 , VAL C:282 , TYR C:326 , HOH C:670 , GLY D:98 , SER D:99BINDING SITE FOR RESIDUE ACT D 201
32DC5SOFTWAREASP D:77BINDING SITE FOR RESIDUE ACT D 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N7S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4N7S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N7S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N7S)

(-) Exons   (0, 0)

(no "Exon" information available for 4N7S)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:401
                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh........hhhhhhhhhhhhhh..hhhhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.......hhhhh..hhhhhhhhhhhhhhhhhhhh...................hhhhhh.hhhhh...hhhhhhhhhh.hhhhhhhh.....hhhhhhh..hhhhhhhhhhhhhhh.....hhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh......ee....eehhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n7s A   2 TATSDLIESLISYSWDDWQVTRQEARRVIAAIRNDNVPDATIAALDKSGSLIKLFQRVGPPELARSLIASIAGRTTMQRYQARNALIRSLINNPLGTQTDNWIYFPTITFFDICADLADAAGRLGFAAAGATGVASQAIQGPFSGVGATGVNPTDLPSIAFGDQLKLLNKDPATVTKYSNPLGDLGAYLSQLSPQDKLNQAQTLVGQPISTLFPDAYPGNPPSRAKVMSAAARKYDLTPQLIGAIILAEQRDQTRDEDAKDYQAAVSIKSANTSIGLGQVVVSTAIKYELFTDLLGQPVRRGLSRKAVATLLASDEFNIFATARYIRYVANLASQQDLRKLPKTRGAFPSIDLRAYAGNPRNWPRDNVRALASEYTSRPWDDNLSPGWPMFVDDAYATFLD 402
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401 


Chain B from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.....eee....eeeee...eeeeee........eeeeeee........eeeee..eeeeeeeeeeeee..eeeeeeeeeeee..eeeeeeeeeee......hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 4n7s B  26 MTLTHPNGLVVERPVGFDARRSAEGFRFDEGGKLRNPRQLEVQRQDAPPPPDLASRRLGDGEARYKVEEDDGGSAGSEYRLWAAKPAGARWIVVSASEQSEDGEPTFALAWALLERARLQ 145
                                    35        45        55        65        75        85        95       105       115       125       135       145


Chain C from PDB  Type:PROTEIN  Length:401
                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh........hhhhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.....hhhhh..hhhhhhhhhhhhhhhhhhhh...................hhhhhh.hhhhh...hhhhhhhhhh.hhhhhhhhh....hhhhhhhh.hhhhhhhhhhhhhhh.....hhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh......ee....eehhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n7s C   2 TATSDLIESLISYSWDDWQVTRQEARRVIAAIRNDNVPDATIAALDKSGSLIKLFQRVGPPELARSLIASIAGRTTMQRYQARNALIRSLINNPLGTQTDNWIYFPTITFFDICADLADAAGRLGFAAAGATGVASQAIQGPFSGVGATGVNPTDLPSIAFGDQLKLLNKDPATVTKYSNPLGDLGAYLSQLSPQDKLNQAQTLVGQPISTLFPDAYPGNPPSRAKVMSAAARKYDLTPQLIGAIILAEQRDQTRDEDAKDYQAAVSIKSANTSIGLGQVVVSTAIKYELFTDLLGQPVRRGLSRKAVATLLASDEFNIFATARYIRYVANLASQQDLRKLPKTRGAFPSIDLRAYAGNPRNWPRDNVRALASEYTSRPWDDNLSPGWPMFVDDAYATFLD 402
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401 


Chain D from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........ee......ee......eeeeee........eeeeeee........eeeee..eeeeeeeeeeeee..eeeeeeeeeeee..eeeeeeeeeee......hhhhhhhhhh.ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 4n7s D  26 MTLTHPNGLVVERPVGFDARRSAEGFRFDEGGKLRNPRQLEVQRQDAPPPPDLASRRLGDGEARYKVEEDDGGSAGSEYRLWAAKPAGARWIVVSASEQSEDGEPTFALAWALLERARLQ 145
                                    35        45        55        65        75        85        95       105       115       125       135       145
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4N7S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N7S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N7S)

(-) Gene Ontology  (2, 2)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9HYC4_PSEAE | Q9HYC4: 3wa5 4luq 4m5f 4n80 4n88
        Q9HYC5_PSEAE | Q9HYC5: 3wa5 4luq 4m5e 4m5f 4n80 4n88

(-) Related Entries Specified in the PDB File

4m5e COMPLEX STRUCTURE
4m5f
4n80
4n88