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(-) Description

Title :  COMPLEX STRUCTURE OF TSE3-TSI3
 
Authors :  L. C. Gu
Date :  08 Aug 13  (Deposition) - 23 Apr 14  (Release) - 18 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Beta-Sheets, Hydrolase Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Lu, G. Shang, H. Zhang, Q. Yu, X. Cong, J. Yuan, F. He, C. Zhu, Y. Zhao, K. Yin, Y. Chen, J. Hu, X. Zhang, Z. Yuan, S. Xu, W. Hu, H. Cang, L. Gu
Structural Insights Into The T6Ss Effector Protein Tse3 And The Tse3-Tsi3 Complex From Pseudomonas Aeruginosa Reveal A Calcium-Dependent Membrane-Binding Mechanism
Mol. Microbiol. V. 92 1092 2014
PubMed-ID: 24724564  |  Reference-DOI: 10.1111/MMI.12616

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: FRAGMENT
    Gene: PA3484
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228
 
Molecule 2 - UNCHARACTERIZED PROTEIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PA3485
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
2PO43Ligand/IonPHOSPHATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:181 , ASP A:253 , GLN A:254 , GLU A:258 , GLN A:280 , HOH A:604 , HOH B:309BINDING SITE FOR RESIDUE CA A 501
2AC2SOFTWAREGLU A:375 , SER A:378 , ARG A:379 , ASP A:382 , ASN A:384 , HOH A:740BINDING SITE FOR RESIDUE CA A 502
3AC3SOFTWAREGLU A:258 , ASP A:262 , SER A:275 , GLN A:280 , GLU B:126BINDING SITE FOR RESIDUE CA A 503
4AC4SOFTWAREALA A:161 , PHE A:162 , GLY A:163 , SER A:224 , ALA A:226 , LYS A:227BINDING SITE FOR RESIDUE PO4 A 504
5AC5SOFTWAREALA A:122 , GLY A:126 , PHE A:127 , ALA A:128 , ALA A:129 , LYS A:227 , HOH A:726BINDING SITE FOR RESIDUE PO4 A 505
6AC6SOFTWAREARG B:63 , GLU B:123 , THR B:131 , PHE B:132 , ALA B:133 , LEU B:134 , HOH B:314BINDING SITE FOR RESIDUE PO4 B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M5F)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Thr A:2 -Ala A:3
2Val A:59 -Gly A:60

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M5F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M5F)

(-) Exons   (0, 0)

(no "Exon" information available for 4M5F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:399
                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.......hhhhh..hhhhhhhhhhhhhhhhhhh....................hhhhhh.hhhhh...hhhhhhhhhh.hhhhhhhh.....hhhhhhhh.hhhhhhhhhhhhhhh.....hhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh......ee....eehhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m5f A   2 TATSDLIESLISYSWDDWQVTRQEARRVIAAIRNDNVPDATIAALDKSGSLIKLFQRVGPPELARSLIASIAGRTTMQRYQARNALIRSLINNPLGTQTDNWIYFPTITFFDICADLADAAGRLGFAAAGATGVASQAIQGPFSGVGATGVNPTDLPSIAFGDQLKLLNKDPATVTKYSNPLGDLGAYLSQLSPQDKLNQAQTLVGQPISTLFPDAYPGNPPSRAKVMSAAARKYDLTPQLIGAIILAEQRDQTRDEDAKDYQAAVSIKSANTSIGLGQVVVSTAIKYELFTDLLGQPVRRGLSRKAVATLLASDEFNIFATARYIRYVANLASQQDLRKLPKTRGAFPSIDLRAYAGNPRNWPRDNVRALASEYTSRPWDDNLSPGWPMFVDDAYATF 400
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391         


Chain B from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee...eeeeee..eeeee...eeeeee........eeeeeee........eeee....eeeeeeeeeeee..eeeeeeeeeeee..eeeeeeeeeee......hhhhhhhhhh.ee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m5f B  22 VDFDKTLTHPNGLVVERPVGFDARRSAEGFRFDEGGKLRNPRQLEVQRQDAPPPPDLASRRLGDGEARYKVEEDDGGSAGSEYRLWAAKPAGARWIVVSASEQSEDGEPTFALAWALLERARLQ 145
                                    31        41        51        61        71        81        91       101       111       121       131       141
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4M5F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M5F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M5F)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Thr A:2 - Ala A:3   [ RasMol ]  
    Val A:59 - Gly A:60   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9HYC4_PSEAE | Q9HYC4: 3wa5 4luq 4n7s 4n80 4n88
        Q9HYC5_PSEAE | Q9HYC5: 3wa5 4luq 4m5e 4n7s 4n80 4n88

(-) Related Entries Specified in the PDB File

4m5e 4m5f 4n7s 4n80