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(-) Description

Title :  TSE3 STRUCTURE
 
Authors :  Y. Qian
Date :  08 Aug 13  (Deposition) - 23 Apr 14  (Release) - 18 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.49
Chains :  Asym./Biol. Unit :  A
Keywords :  Toxin, Lysozyme Fold, Hydrolase, Persiplasm (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Lu, G. Shang, H. Zhang, Q. Yu, X. Cong, J. Yuan, F. He, C. Zhu, Y. Zhao, K. Yin, Y. Chen, J. Hu, X. Zhang, Z. Yuan, S. Xu, W. Hu, H. Cang, L. Gu
Structural Insights Into The T6Ss Effector Protein Tse3 And The Tse3-Tsi3 Complex From Pseudomonas Aeruginosa Reveal A Calcium-Dependent Membrane-Binding Mechanism
Mol. Microbiol. V. 92 1092 2014
PubMed-ID: 24724564  |  Reference-DOI: 10.1111/MMI.12616

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-402
    Gene: PA3484
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2CD1Ligand/IonCADMIUM ION
3GOL3Ligand/IonGLYCEROL

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:280 , VAL A:281 , VAL A:282 , THR A:285 , TYR A:376 , HOH A:894BINDING SITE FOR RESIDUE GOL A 501
2AC2SOFTWAREASN A:102 , ASN A:153 , ASP A:156 , THR A:212 , LEU A:213 , HOH A:673 , HOH A:681 , HOH A:958BINDING SITE FOR RESIDUE GOL A 502
3AC3SOFTWARETYR A:289 , ARG A:325 , HOH A:762 , HOH A:763 , HOH A:783BINDING SITE FOR RESIDUE GOL A 503
4AC4SOFTWAREASP A:18 , GLN A:20 , GLU A:25 , HOH A:601 , HOH A:602BINDING SITE FOR RESIDUE CD A 504
5AC5SOFTWAREGLU A:375 , SER A:378 , ARG A:379 , ASP A:382 , ASN A:384 , HOH A:618BINDING SITE FOR RESIDUE CA A 505
6AC6SOFTWAREASN A:181 , ASP A:253 , GLN A:254 , GLU A:258 , HOH A:604 , HOH A:611BINDING SITE FOR RESIDUE CA A 506
7AC7SOFTWAREASP A:117 , HOH A:636 , HOH A:668 , HOH A:721 , HOH A:880BINDING SITE FOR RESIDUE CA A 507
8AC8SOFTWAREHOH A:610 , HOH A:648 , HOH A:672BINDING SITE FOR RESIDUE CA A 508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M5E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4M5E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M5E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M5E)

(-) Exons   (0, 0)

(no "Exon" information available for 4M5E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:405
                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.....hhhhh..hhhhhhhhhhhhhhhhhhh....................hhhhhh.hhhhh...hhhhhhhhhh.hhhhhhhh.....hhhhhhhh.hhhhhhhhhhhhhhh.....hhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh......ee....eehhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m5e A   2 TATSDLIESLISYSWDDWQVTRQEARRVIAAIRNDNVPDATIAALDKSGSLIKLFQRVGPPELARSLIASIAGRTTMQRYQARNALIRSLINNPLGTQTDNWIYFPTITFFDICADLADAAGRLGFAAAGATGVASQAIQGPFSGVGATGVNPTDLPSIAFGDQLKLLNKDPATVTKYSNPLGDLGAYLSQLSPQDKLNQAQTLVGQPISTLFPDAYPGNPPSRAKVMSAAARKYDLTPQLIGAIILAEQRDQTRDEDAKDYQAAVSIKSANTSIGLGQVVVSTAIKYELFTDLLGQPVRRGLSRKAVATLLASDEFNIFATARYIRYVANLASQQDLRKLPKTRGAFPSIDLRAYAGNPRNWPRDNVRALASEYTSRPWDDNLSPGWPMFVDDAYATFLDLEHH 406
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4M5E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M5E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M5E)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9HYC5_PSEAE | Q9HYC5: 3wa5 4luq 4m5f 4n7s 4n80 4n88

(-) Related Entries Specified in the PDB File

4m5f 4n7s 4n80 4n88