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(-) Description

Title :  NODAL/BMP2 CHIMERA NB250
 
Authors :  L. Esquivies
Date :  04 Oct 13  (Deposition) - 04 Dec 13  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.91
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Cytokine, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Esquivies, A. Blackler, M. Peran, C. Rodriguez-Esteban, J. C. Izpisua Belmonte, E. Booker, P. C. Gray, C. Ahn, W. Kwiatkowski, S. Choe
Designer Nodal/Bmp2 Chimeras Mimic Nodal Signaling, Promote Chondrogenesis, And Reveal A Bmp2-Like Structure.
J. Biol. Chem. V. 289 1788 2014
PubMed-ID: 24311780  |  Reference-DOI: 10.1074/JBC.M113.529180

(-) Compounds

Molecule 1 - NODAL/BMP2 CHIMERA PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BMP2, BMP2A, NODAL
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BMP-2, BONE MORPHOGENETIC PROTEIN 2A, BMP-2A

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4N1D)

(-) Sites  (0, 0)

(no "Site" information available for 4N1D)

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:14 -A:80
2A:43 -A:112
3A:47 -A:114
4A:79 -A:79

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Lys A:11 -Ser A:12
2Tyr A:34 -Pro A:35
3Asn A:49 -Pro A:50

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N1D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N1D)

(-) Exons   (0, 0)

(no "Exon" information available for 4N1D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:105
                                                                                                                                         
               SCOP domains d4n1da_ A: automated matches                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..eee.........eee..eee..eee.......hhhhh.hhhhhhhhhhhhhh.......eeeeeeeeeeeeeee.....eeeeeeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 4n1d A  11 KSSCKRHPLYVDFNLIGWGSWIIYPKQYNAYRCEGECPNPVGEEFHPTNHAYIQSLLKRYQPHRVPSTCCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR 115
                                    20        30        40        50        60        70        80        90       100       110
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N1D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N1D)

(-) Gene Ontology  (172, 187)

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  Cis Peptide Bonds
    Asn A:49 - Pro A:50   [ RasMol ]  
    Lys A:11 - Ser A:12   [ RasMol ]  
    Tyr A:34 - Pro A:35   [ RasMol ]  
 
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  4n1d
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  BMP2_HUMAN | P12643
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  NODAL_HUMAN | Q96S42
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BMP2_HUMAN | P12643: 1es7 1reu 1rew 2goo 2h62 2h64 2qj9 2qja 2qjb 3bk3 3bmp 4mid 4uhy 4uhz 4ui0 4ui1 4ui2

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4N1D)